- using R Under development (unstable) (2025-12-26 r89230)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘resourcecode/DESCRIPTION’ ... OK
- this is package ‘resourcecode’ version ‘0.5.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘resourcecode’ can be installed ... [33s/20s] OK
See the install log for details.
- used C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [12s/12s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [6s/14s] ERROR
Running examples in ‘resourcecode-Ex.R’ failed
The error most likely occurred in:
> ### Name: get_1d_spectrum
> ### Title: Download the 1D spectrum data from IFREMER ftp
> ### Aliases: get_1d_spectrum
>
> ### ** Examples
>
> ## Don't show:
> if (curl::has_internet()) withAutoprint({ # examplesIf
+ ## End(Don't show)
+ spec1D <- get_1d_spectrum("SEMREVO", start = "1994-01-01", end = "1994-02-28")
+ r <- as.POSIXct(round(range(spec1D$forcings$time), "month"))
+ image(spec1D$forcings$time, spec1D$freq, t(spec1D$ef),
+ xaxt = "n", xlab = "Time",
+ ylab = "Frequency (Hz)"
+ )
+ axis.POSIXct(1, spec1D$forcings$time,
+ at = seq(r[1], r[2], by = "week"),
+ format = "%Y-%m-%d", las = 2
+ )
+ ## Don't show:
+ }) # examplesIf
> spec1D <- get_1d_spectrum("SEMREVO", start = "1994-01-01", end = "1994-02-28")
Could not download spectral data.
The remote server may be unavailable or the URL may have changed.
Error in ncdf4::nc_open(file) :
Passed a filename that is NOT a string of characters!
Calls: withAutoprint ... get_1d_spectrum -> get_1d_spectrum_raw -> <Anonymous>
Execution halted
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [45s/26s] OK
Running ‘testthat.R’ [45s/25s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [26s/30s] ERROR
Error(s) in re-building vignettes:
--- re-building ‘resourcecode.Rmd’ using rmarkdown
Quitting from resourcecode.Rmd:141-144 [unnamed-chunk-10]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `ncdf4::nc_open()`:
! Passed a filename that is NOT a string of characters!
---
Backtrace:
▆
1. └─resourcecode::get_1d_spectrum(...)
2. └─resourcecode:::get_1d_spectrum_raw(point, years[1], months[1])
3. └─ncdf4::nc_open(file)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'resourcecode.Rmd' failed with diagnostics:
Passed a filename that is NOT a string of characters!
--- failed re-building ‘resourcecode.Rmd’
SUMMARY: processing the following file failed:
‘resourcecode.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 2 ERRORs