* installing *source* package ‘relsurv’ ...
** this is package ‘relsurv’ version ‘2.3-2’
** package ‘relsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c aalen_beta.cpp -o aalen_beta.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c cmpfast.c -o cmpfast.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c dmatrix.c -o dmatrix.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c exps.c -o exps.o
exps.c: In function ‘expc’:
exps.c:78:65: warning: ‘/*’ within comment [-Wcomment]
   78 |     /*si2 = (double *)ALLOC(n, sizeof(double));                 /*Si for each individual - a je to prav???*/
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c netfastp.c -o netfastp.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c netfastpinter.c -o netfastpinter.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c netfastpinter2.c -o netfastpinter2.o
netfastpinter2.c: In function ‘netfastpinter2’:
netfastpinter2.c:53:13: warning: variable ‘et2’ set but not used [-Wunused-but-set-variable]
   53 |             et2,
      |             ^~~
netfastpinter2.c:46:13: warning: unused variable ‘nprec’ [-Wunused-variable]
   46 |             nprec;
      |             ^~~~~
netfastpinter2.c:278:42: warning: ‘sisum’ may be used uninitialized [-Wmaybe-uninitialized]
  278 |                         yidlisi[j]=hazard/sisum;                                //the total hazard divided by the si at the end of the crude interval
      |                                    ~~~~~~^~~~~~
netfastpinter2.c:61:13: note: ‘sisum’ was declared here
   61 |             sisum,
      |             ^~~~~
netfastpinter2.c:279:44: warning: ‘sisumtt’ may be used uninitialized [-Wmaybe-uninitialized]
  279 |                         yidlisitt[j]=hazard/sisumtt;                                    // the total hazard divided by the si at the beginning of the crude interval
      |                                      ~~~~~~^~~~~~~~
netfastpinter2.c:62:13: note: ‘sisumtt’ was declared here
   62 |             sisumtt,
      |             ^~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c netwei.c -o netwei.o
netwei.c: In function ‘netwei’:
netwei.c:195:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  195 |       for (k=0; k<edim; k++)
      |       ^~~
netwei.c:197:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  197 |         etime -= et2;
      |         ^~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c netweiDM.c -o netweiDM.o
netweiDM.c: In function ‘netweiDM’:
netweiDM.c:204:7: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  204 |       for (k=0; k<edim; k++)
      |       ^~~
netweiDM.c:206:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  206 |         etime -= et2;
      |         ^~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c pystep.c -o pystep.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c pystep2.c -o pystep2.o
pystep2.c:2:1: warning: ‘/*’ within comment [-Wcomment]
    2 | /*$Id: pystep.c 11166 2008-11-24 22:10:34Z therneau $ */
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o relsurv.so RcppExports.o aalen_beta.o cmpfast.o dmatrix.o exps.o netfastp.o netfastpinter.o netfastpinter2.o netwei.o netweiDM.o pystep.o pystep2.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
installing to /data/gannet/ripley/R/packages/tests-devel/relsurv.Rcheck/00LOCK-relsurv/00new/relsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (relsurv)