* installing *source* package ‘relsurv’ ...
** package ‘relsurv’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cmpfast.c -o cmpfast.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dmatrix.c -o dmatrix.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c exps.c -o exps.o
exps.c: In function 'expc':
exps.c:78:65: warning: "/*" within comment [-Wcomment]
78 | /*si2 = (double *)ALLOC(n, sizeof(double)); /*Si for each individual - a je to prav???*/
|
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c netfastp.c -o netfastp.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c netfastpinter.c -o netfastpinter.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c netfastpinter2.c -o netfastpinter2.o
netfastpinter2.c: In function 'netfastpinter2':
netfastpinter2.c:53:13: warning: variable 'et2' set but not used [-Wunused-but-set-variable]
53 | et2,
| ^~~
netfastpinter2.c:46:13: warning: unused variable 'nprec' [-Wunused-variable]
46 | nprec;
| ^~~~~
netfastpinter2.c:278:42: warning: 'sisum' may be used uninitialized [-Wmaybe-uninitialized]
278 | yidlisi[j]=hazard/sisum; //the total hazard divided by the si at the end of the crude interval
| ~~~~~~^~~~~~
netfastpinter2.c:61:13: note: 'sisum' was declared here
61 | sisum,
| ^~~~~
netfastpinter2.c:279:44: warning: 'sisumtt' may be used uninitialized [-Wmaybe-uninitialized]
279 | yidlisitt[j]=hazard/sisumtt; // the total hazard divided by the si at the beginning of the crude interval
| ~~~~~~^~~~~~~~
netfastpinter2.c:62:13: note: 'sisumtt' was declared here
62 | sisumtt,
| ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c netwei.c -o netwei.o
netwei.c: In function 'netwei':
netwei.c:195:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
195 | for (k=0; k<edim; k++)
| ^~~
netwei.c:197:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
197 | etime -= et2;
| ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c netweiDM.c -o netweiDM.o
netweiDM.c: In function 'netweiDM':
netweiDM.c:204:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation]
204 | for (k=0; k<edim; k++)
| ^~~
netweiDM.c:206:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for'
206 | etime -= et2;
| ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pystep.c -o pystep.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pystep2.c -o pystep2.o
pystep2.c:2:1: warning: "/*" within comment [-Wcomment]
2 | /*$Id: pystep.c 11166 2008-11-24 22:10:34Z therneau $ */
|
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o relsurv.so cmpfast.o dmatrix.o exps.o init.o netfastp.o netfastpinter.o netfastpinter2.o netwei.o netweiDM.o pystep.o pystep2.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/relsurv/src'
installing to /data/gannet/ripley/R/packages/tests-devel/relsurv.Rcheck/00LOCK-relsurv/00new/relsurv/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (relsurv)