* installing *source* package ‘redeem’ ...
** this is package ‘redeem’ version ‘1.0.0’
** package ‘redeem’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/redeem/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c current_stat.cpp -o current_stat.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c data_dem.cpp -o data_dem.o
In file included from ../inst/include/redeem/data_dem.h:6,
                 from data_dem.cpp:1:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dem.cpp -o dem.o
In file included from ../inst/include/redeem/data_dem.h:6,
                 from ../inst/include/redeem/helper_functions.h:7,
                 from dem.cpp:1:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c extension_api.cpp -o extension_api.o
In file included from ../inst/include/redeem/data_dem.h:6,
                 from ../inst/include/redeem/sufficient_statistics.h:7,
                 from extension_api.cpp:3:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c gd.cpp -o gd.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c helper_impl.cpp -o helper_impl.o
In file included from ../inst/include/redeem/data_dem.h:6,
                 from ../inst/include/redeem/helper_functions.h:7,
                 from helper_impl.cpp:2:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hist_events.cpp -o hist_events.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rem.cpp -o rem.o
In file included from hist_events.cpp:1:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
In file included from ../inst/include/redeem/data_dem.h:6,
                 from ../inst/include/redeem/rem.h:6,
                 from rem.cpp:2:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sufficient_statistics.cpp -o sufficient_statistics.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I../inst/include/redeem -DREDEEM_COMPILING_REDEEM -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c wrapper.cpp -o wrapper.o
In file included from ../inst/include/redeem/data_dem.h:6,
                 from ../inst/include/redeem/sufficient_statistics.h:7,
                 from sufficient_statistics.cpp:2:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
In file included from ../inst/include/redeem/data_dem.h:6,
                 from ../inst/include/redeem/dem.h:6,
                 from wrapper.cpp:4:
../inst/include/redeem/hist_events.h: In constructor ‘Hist_Events::Hist_Events(unsigned int, bool)’:
../inst/include/redeem/hist_events.h:32:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   32 |     for (unsigned int i = 0; i <= n_nodes; ++i)
      |                              ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h: In member function ‘void Hist_Events::clear()’:
../inst/include/redeem/hist_events.h:82:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   82 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
../inst/include/redeem/hist_events.h:87:34: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
   87 |       for (unsigned int i = 1; i <= n_nodes; i++){
      |                                ~~^~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o redeem.so RcppExports.o current_stat.o data_dem.o dem.o extension_api.o gd.o helper_impl.o hist_events.o rem.o sufficient_statistics.o wrapper.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/redeem/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/redeem/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/redeem/src'
installing to /data/gannet/ripley/R/packages/tests-devel/redeem.Rcheck/00LOCK-redeem/00new/redeem/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redeem)