* installing *source* package ‘redatamx’ ...
** this is package ‘redatamx’ version ‘1.2.1’
** package ‘redatamx’ successfully unpacked and MD5 sums checked
** using staged installation
checking runtime
found: 'linux-gnu'
arch: 'x86_64'
using download from 'https://redatam-core.s3.us-west-2.amazonaws.com/core-dev/linux/redatamx-core-linux-1.2.1-final.zip'
checking REDATAM libraries
cannot find current redatam runtime files
attempting to download them
trying URL 'https://redatam-core.s3.us-west-2.amazonaws.com/core-dev/linux/redatamx-core-linux-1.2.1-final.zip'
Content type 'application/zip' length 15686848 bytes (15.0 MB)
==================================================
downloaded 15.0 MB
unpacking current redatam runtime
Archive: redatam-engine.zip
creating: tmpredatam/release/
creating: tmpredatam/release/lib/
inflating: tmpredatam/release/lib/libexporter-xlsx.so
inflating: tmpredatam/release/lib/libdatasource-csv.so
inflating: tmpredatam/release/lib/libdatasource-cspro8.so
inflating: tmpredatam/release/lib/libdatasource-spss.so
inflating: tmpredatam/release/lib/libredengine-1.2.1-final.so
creating: tmpredatam/release/bin/
inflating: tmpredatam/release/bin/rxapp
creating: tmpredatam/release/bin/locale/
creating: tmpredatam/release/bin/locale/en/
creating: tmpredatam/release/bin/locale/en/LC_MESSAGES/
inflating: tmpredatam/release/bin/locale/en/LC_MESSAGES/redengine.mo
creating: tmpredatam/release/bin/locale/es/
creating: tmpredatam/release/bin/locale/es/LC_MESSAGES/
inflating: tmpredatam/release/bin/locale/es/LC_MESSAGES/redengine.mo
creating: tmpredatam/release/bin/locale/pt/
creating: tmpredatam/release/bin/locale/pt/LC_MESSAGES/
inflating: tmpredatam/release/bin/locale/pt/LC_MESSAGES/redengine.mo
inflating: tmpredatam/release/bin/application.yml
inflating: tmpredatam/release/bin/rxrest
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/redatamx/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cpp11.cpp -o cpp11.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c red_create.cpp -o red_create.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c red_dictionary.cpp -o red_dictionary.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c red_execute.cpp -o red_execute.o
In file included from /usr/include/c++/15/bits/stl_iterator.h:78,
from /usr/include/c++/15/bits/stl_algobase.h:67,
from /usr/include/c++/15/bits/specfun.h:43,
from /usr/include/c++/15/cmath:3913,
from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11/as.hpp:3,
from /data/gannet/ripley/R/test-dev/cpp11/include/cpp11.hpp:5,
from red_execute.cpp:21:
In function ‘constexpr _Tp* std::construct_at(_Tp*, _Args&& ...) [with _Tp = SEXPREC*; _Args = {SEXPREC* const&}]’,
inlined from ‘static constexpr void std::allocator_traits<std::allocator<_Up> >::construct(allocator_type&, _Up*, _Args&& ...) [with _Up = SEXPREC*; _Args = {SEXPREC* const&}; _Tp = SEXPREC*]’ at /usr/include/c++/15/bits/alloc_traits.h:676:21,
inlined from ‘constexpr void std::vector<_Tp, _Alloc>::_M_realloc_append(_Args&& ...) [with _Args = {SEXPREC* const&}; _Tp = SEXPREC*; _Alloc = std::allocator<SEXPREC*>]’ at /usr/include/c++/15/bits/vector.tcc:586:26,
inlined from ‘constexpr void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = SEXPREC*; _Alloc = std::allocator<SEXPREC*>]’ at /usr/include/c++/15/bits/stl_vector.h:1427:21,
inlined from ‘SEXPREC* createOutput(void*, int)’ at red_execute.cpp:143:26:
/usr/include/c++/15/bits/stl_construct.h:110:16: warning: ‘col’ may be used uninitialized [-Wmaybe-uninitialized]
110 | return ::new(__loc) _Tp(std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
red_execute.cpp: In function ‘SEXPREC* createOutput(void*, int)’:
red_execute.cpp:131:10: note: ‘col’ was declared here
131 | SEXP col;
| ^~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c red_initialize.cpp -o red_initialize.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/cpp11/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c red_plugins.cpp -o red_plugins.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o redatamx.so cpp11.o red_create.o red_dictionary.o red_execute.o red_initialize.o red_plugins.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/redatamx/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/redatamx/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/redatamx/src'
installing to /data/gannet/ripley/R/packages/tests-devel/redatamx.Rcheck/00LOCK-redatamx/00new/redatamx/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (redatamx)