* installing *source* package ‘rcccd’ ...
** this is package ‘rcccd’ version ‘0.3.2’
** package ‘rcccd’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rcccd/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c f_cover_pcccd.cpp -o f_cover_pcccd.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c f_cover_rwcccd.cpp -o f_cover_rwcccd.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:192,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:26,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32,
                 from f_cover_rwcccd.cpp:1:
In function ‘SEXPREC* Rcpp::internal::primitive_wrap__impl__cast(const T&, Rcpp::traits::false_type) [with T = double]’,
    inlined from ‘SEXPREC* Rcpp::internal::primitive_wrap__impl(const T&, Rcpp::traits::r_type_primitive_tag) [with T = double]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:471:46,
    inlined from ‘SEXPREC* Rcpp::internal::primitive_wrap(const T&) [with T = double]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:495:40,
    inlined from ‘SEXPREC* Rcpp::internal::wrap_dispatch(const T&, Rcpp::traits::wrap_type_primitive_tag) [with T = double]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:744:34,
    inlined from ‘SEXPREC* Rcpp::wrap(const T&) [with T = double]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap_end.h:30:38,
    inlined from ‘static SEXPREC* Rcpp::internal::generic_element_converter<RTYPE>::get(const T&) [with T = double; int RTYPE = 19]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/converter.h:80:23,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch__isArgument(Rcpp::traits::false_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:530:13,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element__dispatch(Rcpp::traits::true_type, iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:523:46,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element(iterator, SEXP, R_xlen_t, const U&) [with U = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:512:34,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&) [with T = Rcpp::traits::named_object<double>; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1164:24,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Col<double> >; TArgs = {Rcpp::traits::named_object<double>}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Col<double> >; TArgs = {Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<double>}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
    inlined from ‘static void Rcpp::Vector<RTYPE, StoragePolicy>::replace_element_impl(iterator&, Rcpp::Shield<SEXPREC*>&, int&, const T&, const TArgs& ...) [with T = Rcpp::traits::named_object<arma::Col<double> >; TArgs = {Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<double>}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1170:29,
    inlined from ‘static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create__dispatch(Rcpp::traits::true_type, const T& ...) [with T = {Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<double>}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1146:29,
    inlined from ‘static Rcpp::Vector<RTYPE, StoragePolicy> Rcpp::Vector<RTYPE, StoragePolicy>::create(const T& ...) [with T = {Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<arma::Col<double> >, Rcpp::traits::named_object<double>}; int RTYPE = 19; StoragePolicy = Rcpp::PreserveStorage]’ at /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/vector/Vector.h:1128:50,
    inlined from ‘Rcpp::List f_cover_rwcccd(const arma::mat&, const arma::mat&, const arma::vec&, double, double, double)’ at f_cover_rwcccd.cpp:94:67:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/internal/wrap.h:448:41: warning: ‘cover_proportion’ may be used uninitialized [-Wmaybe-uninitialized]
  448 |             r_vector_start<RTYPE>(x)[0] = object;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
f_cover_rwcccd.cpp: In function ‘Rcpp::List f_cover_rwcccd(const arma::mat&, const arma::mat&, const arma::vec&, double, double, double)’:
f_cover_rwcccd.cpp:24:10: note: ‘cover_proportion’ was declared here
   24 |   double cover_proportion;
      |          ^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o rcccd.so RcppExports.o f_cover_pcccd.o f_cover_rwcccd.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rcccd/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/rcccd/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/rcccd/src'
installing to /data/gannet/ripley/R/packages/tests-devel/rcccd.Rcheck/00LOCK-rcccd/00new/rcccd/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rcccd)