• using R Under development (unstable) (2025-10-13 r88918)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘rbmiUtils/DESCRIPTION’ ... OK
• this is package ‘rbmiUtils’ version ‘0.1.6’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘rbmiUtils’ can be installed ... [6s/11s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [17s/36s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [21s/42s] ERROR   Running ‘spelling.R’   Running ‘testthat.R’ [20s/40s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(rbmiUtils)   >   > test_check("rbmiUtils")      Attaching package: 'dplyr'      The following object is masked from 'package:testthat':          matches      The following objects are masked from 'package:stats':          filter, lag      The following objects are masked from 'package:base':          intersect, setdiff, setequal, union      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 62 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-utils.R:39:3'): positive test get_imputed_data (from vignettes) ──   Error in `fit_mcmc(designmat = model_df_scaled[, -1, drop = FALSE], outcome = model_df_scaled[,       1, drop = TRUE], group = data2[[vars$group]], visit = data2[[vars$visit]],       subjid = data2[[vars$subjid]], method = method, quiet = quiet)`: unable to load shared object '/tmp/Rtmp3OBhSe/working_dir/Rtmp7dDa8z/file35f74b5029332.so':     libunwind.so.1: cannot open shared object file: No such file or directory   Backtrace:       ▆    1. ├─rbmi::draws(data = dat, vars = vars, method = method, quiet = TRUE) at test-utils.R:39:3    2. └─rbmi:::draws.bayes(...)    3. └─rbmi:::fit_mcmc(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 62 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [31s/67s] ERROR Error(s) in re-building vignettes: --- re-building ‘analyse2.Rmd’ using rmarkdown Quitting from analyse2.Rmd:90-99 [impute] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `fit_mcmc()`: ! unable to load shared object '/tmp/Rtmp3OBhSe/working_dir/RtmpG4dQqf/file360ef95ff06858.so':   libunwind.so.1: cannot open shared object file: No such file or directory --- Backtrace:     ▆  1. ├─rbmi::draws(data = dat, vars = vars, method = method)  2. └─rbmi:::draws.bayes(data = dat, vars = vars, method = method)  3. └─rbmi:::fit_mcmc(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'analyse2.Rmd' failed with diagnostics: unable to load shared object '/tmp/Rtmp3OBhSe/working_dir/RtmpG4dQqf/file360ef95ff06858.so':   libunwind.so.1: cannot open shared object file: No such file or directory --- failed re-building ‘analyse2.Rmd’ SUMMARY: processing the following file failed:   ‘analyse2.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [7s/12s] OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 2 ERRORs