* installing *source* package ‘randomForestSGT’ ... ** this is package ‘randomForestSGT’ version ‘1.0.0’ ** package ‘randomForestSGT’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/randomForestSGT/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c R_init_randomForestSGT.c -o R_init_randomForestSGT.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entry.c -o entry.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c augmentationOps.c -o augmentationOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c augmentationOpsCommon.c -o augmentationOpsCommon.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c augmentationOpsCustom.c -o augmentationOpsCustom.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c augmentationOpsSimple.c -o augmentationOpsSimple.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cdlMain.c -o cdlMain.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cdlRegr.c -o cdlRegr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cdlUtil.c -o cdlUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cvRegr.c -o cvRegr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cvUtil.c -o cvUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c descriptor.c -o descriptor.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c entryGeneric.c -o entryGeneric.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c greedyOps.c -o greedyOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c internal.c -o internal.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c nodeOps.c -o nodeOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c nrutilDerived.c -o nrutilDerived.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c processEnsemble.c -o processEnsemble.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c regressionDerived.c -o regressionDerived.o regressionDerived.c: In function ‘calculateMeanResponseCDL’: regressionDerived.c:69:11: warning: variable ‘yArray’ set but not used [-Wunused-but-set-variable] 69 | double *yArray; | ^~~~~~ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c server.c -o server.o server.c: In function ‘server’: server.c:35:11: warning: variable ‘k’ set but not used [-Wunused-but-set-variable] 35 | uint i, k; | ^ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sexpOutgoing.c -o sexpOutgoing.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sgtMain.c -o sgtMain.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sgtMainRT.c -o sgtMainRT.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c splitGreedy.c -o splitGreedy.o splitGreedy.c: In function ‘getBestSplit’: splitGreedy.c:272:14: warning: ‘sumLassoOOB’ may be used uninitialized [-Wmaybe-uninitialized] 272 | if (sumLasso >= sumCart) { | ^ splitGreedy.c:40:10: note: ‘sumLassoOOB’ was declared here 40 | double sumLassoOOB, sumCartOOB; | ^~~~~~~~~~~ splitGreedy.c:274:38: warning: ‘eRiskLossLasso’ may be used uninitialized [-Wmaybe-uninitialized] 274 | greedyMembr -> eRiskLoss = eRiskLossCart; | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ splitGreedy.c:41:10: note: ‘eRiskLossLasso’ was declared here 41 | double eRiskLossLasso, eRiskLossCart; | ^~~~~~~~~~~~~~ gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c splitInfoDerived.c -o splitInfoDerived.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c splitRegr.c -o splitRegr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c splitUtil.c -o splitUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stackOutput.c -o stackOutput.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stackOutputQQ.c -o stackOutputQQ.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c termOps.c -o termOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c treeOps.c -o treeOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c treeOpsRT.c -o treeOpsRT.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/bootstrap.c -o shared/bootstrap.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/classification.c -o shared/classification.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/diagnostic.c -o shared/diagnostic.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/error.c -o shared/error.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/factorOps.c -o shared/factorOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/internalCore.c -o shared/internalCore.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/leafLink.c -o shared/leafLink.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/nativeUtil.c -o shared/nativeUtil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/nodeBaseOps.c -o shared/nodeBaseOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/nrutil.c -o shared/nrutil.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackParallel.c -o shared/stackParallel.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/polarityNew.c -o shared/polarityNew.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/preprocessForestRecord.c -o shared/preprocessForestRecord.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/quantile.c -o shared/quantile.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/random.c -o shared/random.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/regression.c -o shared/regression.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/restoreTree.c -o shared/restoreTree.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/sampling.c -o shared/sampling.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/sexpIO.c -o shared/sexpIO.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/sortedLink.c -o shared/sortedLink.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/splitInfo.c -o shared/splitInfo.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stack.c -o shared/stack.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackAuxiliaryInfo.c -o shared/stackAuxiliaryInfo.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackForestObjects.c -o shared/stackForestObjects.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackIncoming.c -o shared/stackIncoming.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackMembershipVectors.c -o shared/stackMembershipVectors.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/stackPreDefined.c -o shared/stackPreDefined.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/survival.c -o shared/survival.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/termBaseOps.c -o shared/termBaseOps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ishared -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c shared/trace.c -o shared/trace.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o randomForestSGT.so R_init_randomForestSGT.o entry.o augmentationOps.o augmentationOpsCommon.o augmentationOpsCustom.o augmentationOpsSimple.o cdlMain.o cdlRegr.o cdlUtil.o cvRegr.o cvUtil.o descriptor.o entryGeneric.o greedyOps.o internal.o nodeOps.o nrutilDerived.o processEnsemble.o regressionDerived.o server.o sexpOutgoing.o sgtMain.o sgtMainRT.o splitGreedy.o splitInfoDerived.o splitRegr.o splitUtil.o stackOutput.o stackOutputQQ.o termOps.o treeOps.o treeOpsRT.o shared/bootstrap.o shared/classification.o shared/diagnostic.o shared/error.o shared/factorOps.o shared/internalCore.o shared/leafLink.o shared/nativeUtil.o shared/nodeBaseOps.o shared/nrutil.o shared/stackParallel.o shared/polarityNew.o shared/preprocessForestRecord.o shared/quantile.o shared/random.o shared/regression.o shared/restoreTree.o shared/sampling.o shared/sexpIO.o shared/sortedLink.o shared/splitInfo.o shared/stack.o shared/stackAuxiliaryInfo.o shared/stackForestObjects.o shared/stackIncoming.o shared/stackMembershipVectors.o shared/stackPreDefined.o shared/survival.o shared/termBaseOps.o shared/trace.o -fopenmp make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/randomForestSGT/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/randomForestSGT/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/randomForestSGT/src' installing to /data/gannet/ripley/R/packages/tests-devel/randomForestSGT.Rcheck/00LOCK-randomForestSGT/00new/randomForestSGT/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (randomForestSGT)