- using R Under development (unstable) (2026-03-26 r89715)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
* current time: 2026-03-26 20:21:01 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘radEmu/DESCRIPTION’ ... OK
- this is package ‘radEmu’ version ‘2.3.1.0’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘radEmu’ can be installed ... [20s/71s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... [3s/11s] OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... [3s/11s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [38s/110s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [22s/66s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [11m/14m] ERROR
Running ‘testthat.R’ [11m/14m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(radEmu)
Loading required package: MASS
Loading required package: Matrix
Loading required package: magrittr
Attaching package: 'magrittr'
The following objects are masked from 'package:testthat':
equals, is_less_than, not
Loading required package: rlang
Attaching package: 'rlang'
The following object is masked from 'package:magrittr':
set_names
>
> test_check("radEmu")
Saving _problems/test-macro_fisher_null-447.R
[ FAIL 1 | WARN 0 | SKIP 21 | PASS 237 ]
══ Skipped tests (21) ══════════════════════════════════════════════════════════
• Deterministic, slow to run but passes when tested (1): 'test-fit_null.R:3:3'
• Skipping -- a simulation for T1E under cluster dependence. (1):
'test-cluster.R:70:3'
• Skipping -- test requires fitting models to 100 simulated datasets. (1):
'test-emuFit.R:181:3'
• Skipping because test is very slow with J = 100 and p = 8 (1):
'test-emuFit_micro.R:327:3'
• Skipping test that requires 1000 simulations be run (1):
'test-get_score_stat.R:103:3'
• Too slow for automated testing; ~3 mins on laptop (1):
'test-fit_null_discrete.R:177:3'
• confirmed this works but it is too slow for automated testing runs (1):
'test-fit_null_symmetric.R:95:3'
• don't want to test automatically (7): 'test-fit_null_discrete.R:433:3',
'test-fit_null_discrete.R:487:3', 'test-fit_null_discrete.R:540:3',
'test-fit_null_discrete.R:593:3', 'test-fit_null_symmetric.R:282:3',
'test-fit_null_symmetric_subset.R:350:3',
'test-fit_null_symmetric_subset.R:439:3'
• long for automatic testing (4): 'test-fit_null_discrete.R:262:3',
'test-fit_null_discrete.R:295:3', 'test-fit_null_symmetric.R:33:3',
'test-fit_null_symmetric.R:56:3'
• takes too long in automated testing (1):
'test-fit_null_symmetric_subset.R:54:3'
• too long for automated testing (2): 'test-emuFit_micro_discrete.R:149:3',
'test-emuFit_micro_discrete.R:178:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-macro_fisher_null.R:447:3'): We take same step as we'd take using numerical derivatives when gap, rho, u are zero ──
Expected `macro_time[3] < 15` to be TRUE.
Differences:
`actual`: FALSE
`expected`: TRUE
[ FAIL 1 | WARN 0 | SKIP 21 | PASS 237 ]
Error:
! Test failures.
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [177s/186s] OK
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR