* installing *source* package ‘r2sundials’ ... ** this is package ‘r2sundials’ version ‘7.2.1-3’ ** package ‘r2sundials’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/r2sundials/src' g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c r2sundials.cpp -o r2sundials.o g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sunlinsol_rmumps.cpp -o sunlinsol_rmumps.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunmatrix/dense/sunmatrix_dense.c -o lib/sunmatrix/dense/sunmatrix_dense.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunmatrix/band/sunmatrix_band.c -o lib/sunmatrix/band/sunmatrix_band.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunmatrix/sparse/sunmatrix_sparse.c -o lib/sunmatrix/sparse/sunmatrix_sparse.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/nvector/serial/nvector_serial.c -o lib/nvector/serial/nvector_serial.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunnonlinsol/newton/sunnonlinsol_newton.c -o lib/sunnonlinsol/newton/sunnonlinsol_newton.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.c -o lib/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/spgmr/sunlinsol_spgmr.c -o lib/sunlinsol/spgmr/sunlinsol_spgmr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/spfgmr/sunlinsol_spfgmr.c -o lib/sunlinsol/spfgmr/sunlinsol_spfgmr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/dense/sunlinsol_dense.c -o lib/sunlinsol/dense/sunlinsol_dense.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/pcg/sunlinsol_pcg.c -o lib/sunlinsol/pcg/sunlinsol_pcg.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/band/sunlinsol_band.c -o lib/sunlinsol/band/sunlinsol_band.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/lapackband/sunlinsol_lapackband.c -o lib/sunlinsol/lapackband/sunlinsol_lapackband.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/lapackdense/sunlinsol_lapackdense.c -o lib/sunlinsol/lapackdense/sunlinsol_lapackdense.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/spbcgs/sunlinsol_spbcgs.c -o lib/sunlinsol/spbcgs/sunlinsol_spbcgs.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sunlinsol/sptfqmr/sunlinsol_sptfqmr.c -o lib/sunlinsol/sptfqmr/sunlinsol_sptfqmr.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_diag.c -o lib/cvodes/cvodes_diag.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_proj.c -o lib/cvodes/cvodes_proj.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_bandpre.c -o lib/cvodes/cvodes_bandpre.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_nls_stg.c -o lib/cvodes/cvodes_nls_stg.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_nls_stg1.c -o lib/cvodes/cvodes_nls_stg1.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_bbdpre.c -o lib/cvodes/cvodes_bbdpre.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodea_io.c -o lib/cvodes/cvodea_io.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_ls.c -o lib/cvodes/cvodes_ls.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodea.c -o lib/cvodes/cvodea.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_io.c -o lib/cvodes/cvodes_io.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_nls.c -o lib/cvodes/cvodes_nls.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes_nls_sim.c -o lib/cvodes/cvodes_nls_sim.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/cvodes/cvodes.c -o lib/cvodes/cvodes.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_context.c -o lib/sundials/sundials_context.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_math.c -o lib/sundials/sundials_math.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_iterative.c -o lib/sundials/sundials_iterative.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_stepper.c -o lib/sundials/sundials_stepper.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_logger.c -o lib/sundials/sundials_logger.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_linearsolver.c -o lib/sundials/sundials_linearsolver.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_nvector.c -o lib/sundials/sundials_nvector.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_adaptcontroller.c -o lib/sundials/sundials_adaptcontroller.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_memory.c -o lib/sundials/sundials_memory.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_dense.c -o lib/sundials/sundials_dense.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_errors.c -o lib/sundials/sundials_errors.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_profiler.c -o lib/sundials/sundials_profiler.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_futils.c -o lib/sundials/sundials_futils.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_version.c -o lib/sundials/sundials_version.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_matrix.c -o lib/sundials/sundials_matrix.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_band.c -o lib/sundials/sundials_band.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_direct.c -o lib/sundials/sundials_direct.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_nvector_senswrapper.c -o lib/sundials/sundials_nvector_senswrapper.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_nonlinearsolver.c -o lib/sundials/sundials_nonlinearsolver.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I../inst/include -I ../inst/include/sundials -I ./lib/sundials -DNO_FPRINTF_OUTPUT -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/rmumps/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lib/sundials/sundials_hashmap.c -o lib/sundials/sundials_hashmap.o gcc-ar -crvs lib/libsundials.a lib/sunmatrix/dense/sunmatrix_dense.o lib/sunmatrix/band/sunmatrix_band.o lib/sunmatrix/sparse/sunmatrix_sparse.o lib/nvector/serial/nvector_serial.o lib/sunnonlinsol/newton/sunnonlinsol_newton.o lib/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o lib/sunlinsol/spgmr/sunlinsol_spgmr.o lib/sunlinsol/spfgmr/sunlinsol_spfgmr.o lib/sunlinsol/dense/sunlinsol_dense.o lib/sunlinsol/pcg/sunlinsol_pcg.o lib/sunlinsol/band/sunlinsol_band.o lib/sunlinsol/lapackband/sunlinsol_lapackband.o lib/sunlinsol/lapackdense/sunlinsol_lapackdense.o lib/sunlinsol/spbcgs/sunlinsol_spbcgs.o lib/sunlinsol/sptfqmr/sunlinsol_sptfqmr.o lib/cvodes/cvodes_diag.o lib/cvodes/cvodes_proj.o lib/cvodes/cvodes_bandpre.o lib/cvodes/cvodes_nls_stg.o lib/cvodes/cvodes_nls_stg1.o lib/cvodes/cvodes_bbdpre.o lib/cvodes/cvodea_io.o lib/cvodes/cvodes_ls.o lib/cvodes/cvodea.o lib/cvodes/cvodes_io.o lib/cvodes/cvodes_nls.o lib/cvodes/cvodes_nls_sim.o lib/cvodes/cvodes.o lib/sundials/sundials_context.o lib/sundials/sundials_math.o lib/sundials/sundials_iterative.o lib/sundials/sundials_stepper.o lib/sundials/sundials_logger.o lib/sundials/sundials_linearsolver.o lib/sundials/sundials_nvector.o lib/sundials/sundials_adaptcontroller.o lib/sundials/sundials_memory.o lib/sundials/sundials_dense.o lib/sundials/sundials_errors.o lib/sundials/sundials_profiler.o lib/sundials/sundials_futils.o lib/sundials/sundials_version.o lib/sundials/sundials_matrix.o lib/sundials/sundials_band.o lib/sundials/sundials_direct.o lib/sundials/sundials_nvector_senswrapper.o lib/sundials/sundials_nonlinearsolver.o lib/sundials/sundials_hashmap.o a - lib/sunmatrix/dense/sunmatrix_dense.o a - lib/sunmatrix/band/sunmatrix_band.o a - lib/sunmatrix/sparse/sunmatrix_sparse.o a - lib/nvector/serial/nvector_serial.o a - lib/sunnonlinsol/newton/sunnonlinsol_newton.o a - lib/sunnonlinsol/fixedpoint/sunnonlinsol_fixedpoint.o a - lib/sunlinsol/spgmr/sunlinsol_spgmr.o a - lib/sunlinsol/spfgmr/sunlinsol_spfgmr.o a - lib/sunlinsol/dense/sunlinsol_dense.o a - lib/sunlinsol/pcg/sunlinsol_pcg.o a - lib/sunlinsol/band/sunlinsol_band.o a - lib/sunlinsol/lapackband/sunlinsol_lapackband.o a - lib/sunlinsol/lapackdense/sunlinsol_lapackdense.o a - lib/sunlinsol/spbcgs/sunlinsol_spbcgs.o a - lib/sunlinsol/sptfqmr/sunlinsol_sptfqmr.o a - lib/cvodes/cvodes_diag.o a - lib/cvodes/cvodes_proj.o a - lib/cvodes/cvodes_bandpre.o a - lib/cvodes/cvodes_nls_stg.o a - lib/cvodes/cvodes_nls_stg1.o a - lib/cvodes/cvodes_bbdpre.o a - lib/cvodes/cvodea_io.o a - lib/cvodes/cvodes_ls.o a - lib/cvodes/cvodea.o a - lib/cvodes/cvodes_io.o a - lib/cvodes/cvodes_nls.o a - lib/cvodes/cvodes_nls_sim.o a - lib/cvodes/cvodes.o a - lib/sundials/sundials_context.o a - lib/sundials/sundials_math.o a - lib/sundials/sundials_iterative.o a - lib/sundials/sundials_stepper.o a - lib/sundials/sundials_logger.o a - lib/sundials/sundials_linearsolver.o a - lib/sundials/sundials_nvector.o a - lib/sundials/sundials_adaptcontroller.o a - lib/sundials/sundials_memory.o a - lib/sundials/sundials_dense.o a - lib/sundials/sundials_errors.o a - lib/sundials/sundials_profiler.o a - lib/sundials/sundials_futils.o a - lib/sundials/sundials_version.o a - lib/sundials/sundials_matrix.o a - lib/sundials/sundials_band.o a - lib/sundials/sundials_direct.o a - lib/sundials/sundials_nvector_senswrapper.o a - lib/sundials/sundials_nonlinearsolver.o a - lib/sundials/sundials_hashmap.o gcc-ranlib lib/libsundials.a g++ -std=gnu++17 -shared -L/usr/local/lib64 -o r2sundials.so RcppExports.o r2sundials.o sunlinsol_rmumps.o -Llib -lsundials -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/r2sundials/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/r2sundials/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/r2sundials/src' installing to /data/gannet/ripley/R/packages/tests-devel/r2sundials.Rcheck/00LOCK-r2sundials/00new/r2sundials/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (r2sundials)