Check results for 'psgp'

using R Under development (unstable) (2023-09-10 r85120)
using platform: x86_64-pc-linux-gnu
R was compiled by
gcc-13 (GCC) 13.2.0
GNU Fortran (GCC) 13.2.0
running under: Fedora Linux 36 (Workstation Edition)
using session charset: UTF-8
using option ‘--no-stop-on-test-error’
checking for file ‘psgp/DESCRIPTION’ ... OK
this is package ‘psgp’ version ‘0.3-20’
checking package namespace information ... OK
checking package dependencies ... OK
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘psgp’ can be installed ... [8m/15m] OK
See the install log for details.
used C compiler: ‘gcc-13 (GCC) 13.2.0’
used C++ compiler: ‘g++-13 (GCC) 13.2.0’
checking package directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking R files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [5s/13s] OK
checking whether the package can be loaded with stated dependencies ... [5s/15s] OK
checking whether the package can be unloaded cleanly ... [4s/12s] OK
checking whether the namespace can be loaded with stated dependencies ... [4s/10s] OK
checking whether the namespace can be unloaded cleanly ... [4s/11s] OK
checking loading without being on the library search path ... [4s/12s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
checking S3 generic/method consistency ... OK
checking replacement functions ... OK
checking foreign function calls ... OK
checking R code for possible problems ... [20s/61s] OK
checking Rd files ... OK
checking Rd metadata ... OK
checking Rd line widths ... OK
checking Rd cross-references ... OK
checking for missing documentation entries ... OK
checking for code/documentation mismatches ... OK
checking Rd \usage sections ... OK
checking Rd contents ... OK
checking for unstated dependencies in examples ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
checking line endings in Makefiles ... OK
checking compilation flags in Makevars ... OK
checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
checking pragmas in C/C++ headers and code ... OK
checking compilation flags used ... OK
checking compiled code ... OK
checking examples ... [9s/28s] OK
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [14s/40s] OK
  Running ‘meuse_psgp.R’ [6s/19s]
  Comparing ‘meuse_psgp.Rout’ to ‘meuse_psgp.Rout.save’ ...3d2
< > options("rgdal_show_exportToProj4_warnings"="none")
5,12d3
< The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
< which was just loaded, will retire in October 2023.
< Please refer to R-spatial evolution reports for details, especially
< https://r-spatial.org/r/2023/05/15/evolution4.html.
< It may be desirable to make the sf package available;
< package maintainers should consider adding sf to Suggests:.
< The sp package is now running under evolution status 2
< (status 2 uses the sf package in place of rgdal)
20a12,26
> Please note that rgdal will be retired during October 2023,
> plan transition to sf/stars/terra functions using GDAL and PROJ
> at your earliest convenience.
> See https://r-spatial.org/r/2023/05/15/evolution4.html and https://github.com/r-spatial/evolution
> rgdal: version: 1.6-7, (SVN revision 1203)
> Geospatial Data Abstraction Library extensions to R successfully loaded
> Loaded GDAL runtime: GDAL 3.4.1, released 2021/12/27
> Path to GDAL shared files: /usr/share/gdal
> GDAL binary built with GEOS: TRUE
> Loaded PROJ runtime: Rel. 8.2.1, January 1st, 2022, [PJ_VERSION: 821]
> Path to PROJ shared files: /home/bri/.local/share/proj:/usr/share/proj
> PROJ CDN enabled: FALSE
> Linking to sp version:1.6-0
> To mute warnings of possible GDAL/OSR exportToProj4() degradation,
> use options("rgdal_show_exportToProj4_warnings"="none") before loading sp or rgdal.
  Running ‘psgp.R’ [7s/20s]
  Comparing ‘psgp.Rout’ to ‘psgp.Rout.save’ ...3d2
< > options("rgdal_show_exportToProj4_warnings"="none")
5,12d3
< The legacy packages maptools, rgdal, and rgeos, underpinning the sp package,
< which was just loaded, will retire in October 2023.
< Please refer to R-spatial evolution reports for details, especially
< https://r-spatial.org/r/2023/05/15/evolution4.html.
< It may be desirable to make the sf package available;
< package maintainers should consider adding sf to Suggests:.
< The sp package is now running under evolution status 2
< (status 2 uses the sf package in place of rgdal)
366,443c357
< Finding optimal parametersCycle 1 Error 101.037816 Scale 1.000000
< Cycle 2 Error 99.255324 Scale 0.500000
< Cycle 3 Error 99.087178 Scale 0.250000
< Cycle 4 Error 98.048341 Scale 0.125000
< Cycle 5 Error 98.003433 Scale 0.062500
< Warning: Maximum number of iterations has been exceeded
< Cycle 1 Error 97.968895 Scale 1.000000
< Cycle 2 Error 97.507592 Scale 0.500000
< Cycle 3 Error 97.495123 Scale 0.250000
< Cycle 4 Error 97.495123 Scale 0.125000
< Cycle 5 Error 97.167710 Scale 0.500000
< Warning: Maximum number of iterations has been exceeded
< Cycle 1 Error 97.139195 Scale 1.000000
< Cycle 2 Error 97.044461 Scale 0.500000
< Cycle 3 Error 97.035602 Scale 0.250000
< Cycle 4 Error 97.023475 Scale 0.125000
< Cycle 5 Error 97.021581 Scale 0.062500
< Warning: Maximum number of iterations has been exceeded
< > krigingObject = spatialPredict(krigingObject)
< Make prediction
< No noise model specified
< Defaulting to GAUSSIAN with variance 0.00
<
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---
> Finding optimal parametersCycle 1 Error 101.037816 Scale 1.000cessing observation: 55/155
769a684,687
> > proc.time()
> user system elapsed
> 3.484 1.494 1.915
>
checking PDF version of manual ... [7s/20s] OK
checking HTML version of manual ... OK
checking for non-standard things in the check directory ... OK
checking for detritus in the temp directory ... OK
DONE

Status: OK