* installing *source* package ‘prototest’ ...
** package ‘prototest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/prototest/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hit_and_run.cpp -o hit_and_run.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c multivariate_alr.cpp -o multivariate_alr.o
hit_and_run.cpp: In function 'void compute_vp_vm(double&, double&, const arma::colvec&, const arma::colvec&, const arma::mat&, const arma::colvec&)':
hit_and_run.cpp:144:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
144 | for (int i = 0; i < Ac.n_rows; i++){
| ~~^~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c multivariate_elr.cpp -o multivariate_elr.o
multivariate_alr.cpp: In function 'arma::mat compute_H(const arma::mat&, const std::vector<int, std::allocator<int> >&, int)':
multivariate_alr.cpp:55:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
55 | for (int k = 0; k < groups.size(); k++){
| ~~^~~~~~~~~~~~~~~
multivariate_alr.cpp:57:23: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
57 | for (int l = k; l < groups.size(); l++){
| ~~^~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c univariate_lr.cpp -o univariate_lr.o
multivariate_elr.cpp: In function 'void print_vector(const arma::colvec&)':
multivariate_elr.cpp:15:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
15 | for (int i = 0; i < vec.n_rows; i++){
| ~~^~~~~~~~~~~~
multivariate_elr.cpp: In function 'void print_std_vector(const std::vector<int, std::allocator<int> >&)':
multivariate_elr.cpp:22:21: warning: comparison of integer expressions of different signedness: 'int' and 'std::vector<int, std::allocator<int> >::size_type' {aka 'long unsigned int'} [-Wsign-compare]
22 | for (int i = 0; i < vec.size(); i++){
| ~~^~~~~~~~~~~~
multivariate_elr.cpp: In function 'void print_matrix(const arma::mat&)':
multivariate_elr.cpp:29:21: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
29 | for (int i = 0; i < m.n_rows; i++){
| ~~^~~~~~~~~~
multivariate_elr.cpp:30:23: warning: comparison of integer expressions of different signedness: 'int' and 'const arma::uword' {aka 'const unsigned int'} [-Wsign-compare]
30 | for (int j = 0; j < m.n_cols; j++){
| ~~^~~~~~~~~~
univariate_lr.cpp: In function 'double maximise_lr(const arma::colvec&, const arma::mat&, double&, double&, double&, bool, double, int)':
univariate_lr.cpp:81:12: warning: variable 'eta_change' set but not used [-Wunused-but-set-variable]
81 | double eta_change = 0, mu_change = 0, sigma_change = 0;
| ^~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o prototest.so RcppExports.o hit_and_run.o multivariate_alr.o multivariate_elr.o univariate_lr.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/prototest/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/prototest/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/prototest/src'
installing to /data/gannet/ripley/R/packages/tests-devel/prototest.Rcheck/00LOCK-prototest/00new/prototest/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (prototest)