* installing *source* package ‘primes’ ...
** package ‘primes’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/primes/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from ../inst/include/primes_RcppExports.h:7,
from ../inst/include/primes.h:7,
from RcppExports.cpp:4:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gcd.cpp -o gcd.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from gcd.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c generate_n_primes.cpp -o generate_n_primes.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from generate_n_primes.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c is_prime.cpp -o is_prime.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from is_prime.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c k_tuple.cpp -o k_tuple.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from k_tuple.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c next_prime.cpp -o next_prime.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from next_prime.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c nth_prime.cpp -o nth_prime.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from nth_prime.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c prime_count.cpp -o prime_count.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from prime_count.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c prime_factors.cpp -o prime_factors.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sieve.cpp -o sieve.o
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from prime_factors.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
In file included from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/routines.h:26,
from /data/gannet/ripley/R/test-dev/Rcpp/include/RcppCommon.h:128,
from /data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp.h:27,
from sieve.cpp:1:
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = true; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:53:20: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
53 | Rprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h: In member function 'std::streamsize Rcpp::Rstreambuf<OUTPUT>::xsputn(const char*, std::streamsize) [with bool OUTPUT = false; std::streamsize = long int]':
/data/gannet/ripley/R/test-dev/Rcpp/include/Rcpp/iostream/Rstreambuf.h:57:21: warning: field precision specifier '.*' expects argument of type 'int', but argument 2 has type 'std::streamsize' {aka 'long int'} [-Wformat=]
57 | REprintf("%.*s", num, s);
| ~~^~ ~~~
| | |
| int std::streamsize {aka long int}
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -o primes.so RcppExports.o gcd.o generate_n_primes.o is_prime.o k_tuple.o next_prime.o nth_prime.o prime_count.o prime_factors.o sieve.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/primes/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/primes/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/primes/src'
installing to /data/gannet/ripley/R/packages/tests-devel/primes.Rcheck/00LOCK-primes/00new/primes/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (primes)