* installing *source* package ‘pkgdepends’ ...
** this is package ‘pkgdepends’ version ‘0.9.0’
** package ‘pkgdepends’ successfully unpacked and MD5 sums checked
** using staged installation
*** Running ./configure
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pkgdepends/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/lib/src/lib.c -o tree-sitter/lib/src/lib.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/r/parser.c -o tree-sitter/r/parser.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/r/scanner.c -o tree-sitter/r/scanner.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/markdown/parser.c -o tree-sitter/markdown/parser.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/markdown/scanner.c -o tree-sitter/markdown/scanner.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/markdown-inline/parser.c -o tree-sitter/markdown-inline/parser.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/markdown-inline/scanner.c -o tree-sitter/markdown-inline/scanner.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/yaml/parser.c -o tree-sitter/yaml/parser.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter/yaml/scanner.c -o tree-sitter/yaml/scanner.o
In file included from tree-sitter/yaml/scanner.c:1:
tree-sitter/yaml/scanner.c: In function ‘pop_ind’:
tree-sitter/yaml/tree_sitter/array.h:106:42: warning: value computed is not used [-Wunused-value]
106 | #define array_pop(self) ((self)->contents[--(self)->size])
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
tree-sitter/yaml/scanner.c:256:5: note: in expansion of macro ‘array_pop’
256 | array_pop(&scanner->ind_len_stk);
| ^~~~~~~~~
tree-sitter/yaml/tree_sitter/array.h:106:42: warning: value computed is not used [-Wunused-value]
106 | #define array_pop(self) ((self)->contents[--(self)->size])
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
tree-sitter/yaml/scanner.c:257:5: note: in expansion of macro ‘array_pop’
257 | array_pop(&scanner->ind_typ_stk);
| ^~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/api.c -o yaml/api.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/dumper.c -o yaml/dumper.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/emitter.c -o yaml/emitter.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/loader.c -o yaml/loader.o
yaml/emitter.c: In function ‘yaml_emitter_write_plain_scalar’:
yaml/emitter.c:28:6: warning: value computed is not used [-Wunused-value]
28 | && ((emitter->line_break == YAML_CR_BREAK ? \
| ^~
yaml/emitter.c:56:11: note: in expansion of macro ‘PUT_BREAK’
56 | (PUT_BREAK(emitter), \
| ^~~~~~~~~
yaml/emitter.c:1962:18: note: in expansion of macro ‘WRITE_BREAK’
1962 | if (!WRITE_BREAK(emitter, string)) return 0;
| ^~~~~~~~~~~
yaml/emitter.c: In function ‘yaml_emitter_write_single_quoted_scalar’:
yaml/emitter.c:28:6: warning: value computed is not used [-Wunused-value]
28 | && ((emitter->line_break == YAML_CR_BREAK ? \
| ^~
yaml/emitter.c:56:11: note: in expansion of macro ‘PUT_BREAK’
56 | (PUT_BREAK(emitter), \
| ^~~~~~~~~
yaml/emitter.c:2019:18: note: in expansion of macro ‘WRITE_BREAK’
2019 | if (!WRITE_BREAK(emitter, string)) return 0;
| ^~~~~~~~~~~
yaml/emitter.c: In function ‘yaml_emitter_write_literal_scalar’:
yaml/emitter.c:28:6: warning: value computed is not used [-Wunused-value]
28 | && ((emitter->line_break == YAML_CR_BREAK ? \
| ^~
yaml/emitter.c:56:11: note: in expansion of macro ‘PUT_BREAK’
56 | (PUT_BREAK(emitter), \
| ^~~~~~~~~
yaml/emitter.c:2285:18: note: in expansion of macro ‘WRITE_BREAK’
2285 | if (!WRITE_BREAK(emitter, string)) return 0;
| ^~~~~~~~~~~
yaml/emitter.c: In function ‘yaml_emitter_write_folded_scalar’:
yaml/emitter.c:28:6: warning: value computed is not used [-Wunused-value]
28 | && ((emitter->line_break == YAML_CR_BREAK ? \
| ^~
yaml/emitter.c:56:11: note: in expansion of macro ‘PUT_BREAK’
56 | (PUT_BREAK(emitter), \
| ^~~~~~~~~
yaml/emitter.c:2334:18: note: in expansion of macro ‘WRITE_BREAK’
2334 | if (!WRITE_BREAK(emitter, string)) return 0;
| ^~~~~~~~~~~
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/parser.c -o yaml/parser.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/reader.c -o yaml/reader.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/scanner.c -o yaml/scanner.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml/writer.c -o yaml/writer.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cleancall.c -o cleancall.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c tree-sitter.c -o tree-sitter.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I./tree-sitter/lib/include -I./tree-sitter/lib/src -I./yaml -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c yaml.c -o yaml.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o pkgdepends.so tree-sitter/lib/src/lib.o tree-sitter/r/parser.o tree-sitter/r/scanner.o tree-sitter/markdown/parser.o tree-sitter/markdown/scanner.o tree-sitter/markdown-inline/parser.o tree-sitter/markdown-inline/scanner.o tree-sitter/yaml/parser.o tree-sitter/yaml/scanner.o yaml/api.o yaml/dumper.o yaml/emitter.o yaml/loader.o yaml/parser.o yaml/reader.o yaml/scanner.o yaml/writer.o init.o cleancall.o tree-sitter.o yaml.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pkgdepends/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/pkgdepends/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/pkgdepends/src'
installing to /data/gannet/ripley/R/packages/tests-devel/pkgdepends.Rcheck/00LOCK-pkgdepends/00new/pkgdepends/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pkgdepends)