- using R Under development (unstable) (2025-09-03 r88782)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘parameters/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘parameters’ version ‘0.28.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘parameters’ can be installed ... [55s/200s] OK
See the install log for details.
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... [4s/12s] OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... [3s/11s] OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... [3s/13s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [153s/527s] OK
- checking Rd files ... [3s/12s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [63s/179s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [278s/535s] ERROR
Running ‘testthat.R’ [278s/533s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(parameters)
> library(testthat)
>
> test_check("parameters")
Starting 2 test processes
[ FAIL 1 | WARN 0 | SKIP 125 | PASS 706 ]
══ Skipped tests (125) ═════════════════════════════════════════════════════════
• On CRAN (115): 'test-GLMMadaptive.R:1:1', 'test-averaging.R:1:1',
'test-backticks.R:1:1', 'test-bootstrap_emmeans.R:1:1',
'test-bootstrap_parameters.R:1:1', 'test-brms.R:1:1',
'test-compare_parameters.R:91:7', 'test-compare_parameters.R:95:5',
'test-complete_separation.R:14:5', 'test-complete_separation.R:24:5',
'test-complete_separation.R:35:5', 'test-coxph.R:79:5', 'test-efa.R:1:1',
'test-emmGrid-df_colname.R:1:1', 'test-equivalence_test.R:10:3',
'test-equivalence_test.R:18:3', 'test-equivalence_test.R:22:3',
'test-equivalence_test.R:112:3', 'test-factor_analysis.R:2:3',
'test-factor_analysis.R:124:3', 'test-format_model_parameters2.R:2:3',
'test-gam.R:30:1', 'test-get_scores.R:1:1', 'test-glmer.R:1:1',
'test-glmmTMB-2.R:1:1', 'test-glmmTMB-profile_CI.R:2:3',
'test-glmmTMB.R:8:1', 'test-group_level_total.R:2:1', 'test-helper.R:1:1',
'test-ivreg.R:54:3', 'test-include_reference.R:16:3',
'test-include_reference.R:69:3', 'test-include_reference.R:121:3',
'test-lmerTest.R:1:1', 'test-mipo.R:19:3', 'test-mipo.R:33:3',
'test-mmrm.R:1:1', 'test-model_parameters.anova.R:1:1',
'test-model_parameters.aov.R:1:1', 'test-model_parameters.aov_es_ci.R:183:3',
'test-model_parameters.aov_es_ci.R:294:3',
'test-model_parameters.aov_es_ci.R:344:3',
'test-model_parameters.aov_es_ci.R:397:3',
'test-model_parameters.bracl.R:5:1', 'test-model_parameters.cgam.R:1:1',
'test-model_parameters.coxme.R:1:1', 'test-marginaleffects.R:176:3',
'test-marginaleffects.R:199:3', 'test-model_parameters.epi2x2.R:1:1',
'test-model_parameters.fixest_multi.R:3:1',
'test-model_parameters.fixest.R:2:3', 'test-model_parameters.fixest.R:77:3',
'test-model_parameters.fixest.R:147:5', 'test-model_parameters.glmgee.R:1:1',
'test-model_parameters.logistf.R:1:1', 'test-model_parameters.logitr.R:1:1',
'test-model_parameters.mclogit.R:5:1', 'test-model_parameters.glm.R:40:3',
'test-model_parameters.glm.R:76:3', 'test-model_parameters.mediate.R:32:3',
'test-model_parameters.mixed.R:2:1', 'test-model_parameters.nnet.R:5:1',
'test-model_parameters.vgam.R:3:1', 'test-model_parameters_df.R:1:1',
'test-model_parameters_ordinal.R:1:1',
'test-model_parameters_random_pars.R:1:1', 'test-model_parameters_std.R:1:1',
'test-model_parameters_std_mixed.R:3:1', 'test-n_factors.R:10:3',
'test-n_factors.R:26:3', 'test-n_factors.R:76:3', 'test-p_adjust.R:1:1',
'test-p_direction.R:1:1', 'test-p_significance.R:1:1', 'test-p_value.R:14:1',
'test-panelr.R:1:1', 'test-pipe.R:1:1', 'test-pca.R:66:3', 'test-polr.R:2:1',
'test-pool_parameters.R:11:3', 'test-pool_parameters.R:32:1',
'test-plm.R:111:3', 'test-posterior.R:2:1', 'test-print_AER_labels.R:11:5',
'test-printing-stan.R:2:1', 'test-printing.R:1:1', 'test-printing2.R:15:7',
'test-printing2.R:22:7', 'test-printing2.R:27:7', 'test-printing2.R:32:7',
'test-printing2.R:37:7', 'test-printing2.R:49:7', 'test-printing2.R:91:7',
'test-printing2.R:127:7', 'test-quantreg.R:1:1',
'test-random_effects_ci.R:4:1', 'test-robust.R:2:1', 'test-rstanarm.R:2:1',
'test-sampleSelection.R:2:1', 'test-serp.R:16:5', 'test-pretty_names.R:65:5',
'test-pretty_names.R:82:7', 'test-svylme.R:1:1',
'test-visualisation_recipe.R:7:3', 'test-weightit.R:23:3',
'test-weightit.R:43:3', 'test-wrs2.R:58:3',
'test-standardize_parameters.R:31:3', 'test-standardize_parameters.R:36:3',
'test-standardize_parameters.R:61:3', 'test-standardize_parameters.R:173:3',
'test-standardize_parameters.R:298:3', 'test-standardize_parameters.R:333:3',
'test-standardize_parameters.R:426:3', 'test-standardize_parameters.R:516:3'
• On Linux (5): 'test-model_parameters.BFBayesFactor.R:1:1',
'test-nestedLogit.R:78:3', 'test-random_effects_ci-glmmTMB.R:3:1',
'test-simulate_model.R:1:1', 'test-simulate_parameters.R:1:1'
• TODO: check this test locally, fails on CI, probably due to scoping issues?
(1): 'test-marginaleffects.R:280:3'
• TODO: fix this test (1): 'test-model_parameters.lqmm.R:40:3'
• TODO: this one actually is not correct. (1):
'test-model_parameters_robust.R:127:3'
• empty test (2): 'test-wrs2.R:69:1', 'test-wrs2.R:81:1'
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-model_parameters.efa_cfa.R:49:3'): efa-cfa ─────────────────────
Error in `UseMethod("logLik")`: no applicable method for 'logLik' applied to an object of class "lavaan"
Backtrace:
▆
1. ├─lavaan::anova(m1, lavaan::cfa(model2, data = attitude)) at test-model_parameters.efa_cfa.R:49:3
2. └─lavaan::anova(m1, lavaan::cfa(model2, data = attitude))
3. └─lavaan::lavTestLRT(object = object, ..., model.names = tmp.names)
4. └─base::sapply(mods, FUN = AIC)
5. └─base::lapply(X = X, FUN = FUN, ...)
6. ├─stats (local) FUN(X[[i]], ...)
7. ├─stats (local) FUN(X[[i]], ...)
8. └─stats:::AIC.default(X[[i]], ...)
9. └─stats (local) ll(object)
[ FAIL 1 | WARN 0 | SKIP 125 | PASS 706 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [17s/66s] OK
- checking PDF version of manual ... [22s/79s] OK
- checking HTML version of manual ... [16s/62s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR