* installing *source* package ‘opusminer’ ...
** package ‘opusminer’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c filter_itemsets.cpp -o filter_itemsets.o
In file included from globals.h:28,
                 from filter_itemsets.cpp:21:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c find_closure.cpp -o find_closure.o
In file included from globals.h:28,
                 from utils.h:19,
                 from find_closure.cpp:19:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c find_itemsets.cpp -o find_itemsets.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c fisher.cpp -o fisher.o
In file included from globals.h:28,
                 from find_itemsets.cpp:25:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c globals.cpp -o globals.o
In file included from globals.h:28,
                 from globals.cpp:19:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c itemQClass.cpp -o itemQClass.o
In file included from globals.h:28,
                 from itemQClass.cpp:19:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c itemset.cpp -o itemset.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c opus_miner.cpp -o opus_miner.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c print_itemsets.cpp -o print_itemsets.o
In file included from globals.h:28,
                 from opus_miner.cpp:26:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
In file included from globals.h:28,
                 from print_itemsets.cpp:22:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils.cpp -o utils.o
In file included from globals.h:28,
                 from utils.h:19,
                 from utils.cpp:18:
tidset.h: In function 'void dintersection(tidset&, tidset&)':
tidset.h:124:32: warning: variable 'end1' set but not used [-Wunused-but-set-variable]
  124 |   const tidset::const_iterator end1 = s1.end();
      |                                ^~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o opusminer.so RcppExports.o filter_itemsets.o find_closure.o find_itemsets.o fisher.o globals.o init.o itemQClass.o itemset.o opus_miner.o print_itemsets.o utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/opusminer/src'
installing to /data/gannet/ripley/R/packages/tests-devel/opusminer.Rcheck/00LOCK-opusminer/00new/opusminer/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (opusminer)