* using log directory ‘/data/gannet/ripley/R/packages/tests-devel/nprcgenekeepr.Rcheck’
* using R Under development (unstable) (2025-07-14 r88410)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
    GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
* running under: Fedora Linux 42 (Workstation Edition)
* using session charset: UTF-8
* using option ‘--no-stop-on-test-error’
* checking for file ‘nprcgenekeepr/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘nprcgenekeepr’ version ‘1.0.7’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘nprcgenekeepr’ can be installed ... [25s/52s] OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-fedora-gcc/nprcgenekeepr-00install.html' for details.
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [5s/12s] OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... [4s/11s] OK
* checking whether the namespace can be loaded with stated dependencies ... [4s/12s] OK
* checking whether the namespace can be unloaded cleanly ... [5s/10s] OK
* checking loading without being on the library search path ... [5s/12s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [38s/84s] OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [67s/158s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [109s/247s] ERROR
  Running ‘spelling.R’
  Running ‘testthat.R’ [108s/245s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
  > #' Copyright(c) 2017-2024 R. Mark Sharp
  > #' This file is part of nprcgenekeepr
  > library(testthat)
  > library(nprcgenekeepr)
  > test_check("nprcgenekeepr")
  15 15 
  15 15 
  [ FAIL 1 | WARN 0 | SKIP 24 | PASS 863 ]
  
  ══ Skipped tests (24) ══════════════════════════════════════════════════════════
  • On CRAN (1): 'test_summary.nprcgenekeeprGV.R:7:3'
  • Sys.info()[names(Sys.info()) == "user"] == "rmsharp" is not TRUE (23):
    'test_fillGroupMembers.R:6:3', 'test_fillGroupMembersWithSexRatio.R:8:5',
    'test_getConfigFileName.R:32:3', 'test_getFocalAnimalPed.R:32:5',
    'test_getFocalAnimalPed.R:59:5', 'test_getFocalAnimalPed.R:85:5',
    'test_getFocalAnimalPed.R:108:5', 'test_groupAddAssign.R:14:3',
    'test_groupAddAssign.R:32:3', 'test_groupAddAssign.R:55:3',
    'test_groupAddAssign.R:76:3', 'test_groupAddAssign.R:104:3',
    'test_groupAddAssign.R:126:5', 'test_groupAddAssign.R:152:5',
    'test_makeExamplePedigreeFile.R:6:3', 'test_makeExamplePedigreeFile.R:11:3',
    'test_makeExamplePedigreeFile.R:20:3', 'test_makeExamplePedigreeFile.R:36:3',
    'test_makeExamplePedigreeFile.R:53:3', 'test_makeExamplePedigreeFile.R:62:3',
    'test_saveDataframesAsFiles.R:11:3', 'test_saveDataframesAsFiles.R:37:3',
    'test_saveDataframesAsFiles.R:62:3'
  
  ══ Failed tests ════════════════════════════════════════════════════════════════
  ── Failure ('test_get_elapsed_time_str.R:9:3'): get_elapsed_time_str gets time string diff back ──
  `elapsed_time` not identical to "1 seconds.".
  1/1 mismatches
  x[1]: "2 seconds."
  y[1]: "1 seconds."
  
  [ FAIL 1 | WARN 0 | SKIP 24 | PASS 863 ]
  Error: Test failures
  Execution halted
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [125s/283s] OK
* checking PDF version of manual ... [15s/31s] OK
* checking HTML version of manual ... [8s/32s] OK
* checking for non-standard things in the check directory ... OK
* checking for detritus in the temp directory ... OK
* DONE
Status: 1 ERROR