* installing *source* package ‘normalblockr’ ...
** this is package ‘normalblockr’ version ‘0.3.0’
** package ‘normalblockr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’
using C++17
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/normalblockr/src'
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -DARMA_WARN_LEVEL=1 -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -DARMA_WARN_LEVEL=1 -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c exports.cpp -o exports.o
In file included from zi_normal_block_var_types.h:4,
                 from exports.cpp:8:
zi_normal_block_var_known_clusters.h: In instantiation of ‘ZINormalBlockVarKnownClusters<NoisePolicy>::ZINormalBlockVarKnownClusters(const ZINormalBlockData&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, double, const arma::mat&) [with NoisePolicy = ZIDiagonalNoise; arma::mat = arma::Mat<double>; arma::vec = arma::Col<double>]’:
exports.cpp:196:113:   required from here
  196 |     zi_norm_block_var_cov_diag_noise_known_clusters model(data, C, B0, dm1_0, Omega0, sparsity, sparsity_weights);
      |                                                                                                                 ^
zi_normal_block_var_known_clusters.h:77:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   77 |     for (arma::uword i = 0; i < data.n; ++i) Gamma_.slice(i) = arma::eye(C.n_cols, C.n_cols);
      |                             ~~^~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘ZINormalBlockVarKnownClusters<NoisePolicy>::ZINormalBlockVarKnownClusters(const ZINormalBlockData&, const arma::mat&, const arma::mat&, const arma::vec&, const arma::mat&, double, const arma::mat&) [with NoisePolicy = ZISphericalNoise; arma::mat = arma::Mat<double>; arma::vec = arma::Col<double>]’:
exports.cpp:200:118:   required from here
  200 |     zi_norm_block_var_cov_spherical_noise_known_clusters model(data, C, B0, dm1_0, Omega0, sparsity, sparsity_weights);
      |                                                                                                                      ^
zi_normal_block_var_known_clusters.h:77:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   77 |     for (arma::uword i = 0; i < data.n; ++i) Gamma_.slice(i) = arma::eye(C.n_cols, C.n_cols);
      |                             ~~^~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘double ZINormalBlockVarKnownClusters<NoisePolicy>::objective() const [with NoisePolicy = ZISphericalNoise]’:
zi_normal_block_var_known_clusters.h:85:10:   required from here
   85 |   double objective() const override {
      |          ^~~~~~~~~
zi_normal_block_var_known_clusters.h:93:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   93 |     for (arma::uword i = 0; i < zi_data_.n; ++i) {
      |                             ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::E_step() [with NoisePolicy = ZISphericalNoise]’:
zi_normal_block_var_known_clusters.h:34:8:   required from here
   34 |   void E_step() override {
      |        ^~~~~~
zi_normal_block_var_known_clusters.h:47:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   47 |     for (arma::uword i = 0; i < zi_data_.n; ++i) {
      |                             ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::M_step() [with NoisePolicy = ZISphericalNoise]’:
zi_normal_block_var_known_clusters.h:54:8:   required from here
   54 |   void M_step() override {
      |        ^~~~~~
zi_normal_block_var_known_clusters.h:61:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   61 |     for (arma::uword i = 0; i < zi_data_.n; ++i) CgC.row(i) = (C_ * Gamma_.slice(i).diag()).t();
      |                             ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘double ZINormalBlockVarKnownClusters<NoisePolicy>::objective() const [with NoisePolicy = ZIDiagonalNoise]’:
zi_normal_block_var_known_clusters.h:85:10:   required from here
   85 |   double objective() const override {
      |          ^~~~~~~~~
zi_normal_block_var_known_clusters.h:93:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   93 |     for (arma::uword i = 0; i < zi_data_.n; ++i) {
      |                             ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::E_step() [with NoisePolicy = ZIDiagonalNoise]’:
zi_normal_block_var_known_clusters.h:34:8:   required from here
   34 |   void E_step() override {
      |        ^~~~~~
zi_normal_block_var_known_clusters.h:47:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   47 |     for (arma::uword i = 0; i < zi_data_.n; ++i) {
      |                             ~~^~~~~~~~~~~~
zi_normal_block_var_known_clusters.h: In instantiation of ‘void ZINormalBlockVarKnownClusters<NoisePolicy>::M_step() [with NoisePolicy = ZIDiagonalNoise]’:
zi_normal_block_var_known_clusters.h:54:8:   required from here
   54 |   void M_step() override {
      |        ^~~~~~
zi_normal_block_var_known_clusters.h:61:31: warning: comparison of integer expressions of different signedness: ‘arma::uword’ {aka ‘unsigned int’} and ‘const int’ [-Wsign-compare]
   61 |     for (arma::uword i = 0; i < zi_data_.n; ++i) CgC.row(i) = (C_ * Gamma_.slice(i).diag()).t();
      |                             ~~^~~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o normalblockr.so RcppExports.o exports.o -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/normalblockr/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/normalblockr/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/normalblockr/src'
installing to /data/localhost/ripley/R/packages/tests-devel/normalblockr.Rcheck/00LOCK-normalblockr/00new/normalblockr/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (normalblockr)