- using R Under development (unstable) (2026-09-11 r90528)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
- running under: Fedora Linux 44 (Server Edition)
- using session charset: UTF-8
* current time: 2026-09-12 01:25:29 UTC
- using option ‘--no-stop-on-test-error’
- checking for file ‘nlmixr2/DESCRIPTION’ ... OK
- this is package ‘nlmixr2’ version ‘7.0.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘nlmixr2’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... OK
- checking whether the namespace can be loaded with stated dependencies ... OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking examples ... [34s/38s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [28s/27s] ERROR
Running ‘testthat.R’ [28s/27s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(nlmixr2)
── Attaching packages ───────────────────────────────────────── nlmixr2 7.0.1 ──
★ lotri 1.0.5 ◯ nlmixr2auto 1.0.0
★ nlmixr2data 2.0.10 ◯ nlmixr2autoinit 1.0.1
★ nlmixr2save 0.2.0 ◯ nlmixr2lib 0.3.2
★ nlmixr2est 7.0.2 ◯ nlmixr2rpt 0.2.2
★ nlmixr2extra 5.2.0 ◯ nlmixr2targets 0.1.0
★ nlmixr2plot 5.1.0 ◯ nonmem2rx 0.1.9
★ rxode2 5.1.6 ◯ pmxNODE 0.1.0
◯ admixr2 0.2.0 ◯ PopED 0.7.0
◯ babelmixr2 0.1.11 ◯ posologyr 1.2.8
◯ FME 1.3.6.4 ◯ shinyMixR 0.5.3
◯ ggPMX 1.3.2 ◯ xpose.nlmixr2 0.4.2
◯ monolix2rx 0.0.6
── Conflicts ───────────────────────────────────────────── nlmixr2conflicts() ──
✖ rxode2::boxCox() masks nlmixr2est::boxCox()
✖ coda::traceplot() masks babelmixr2::traceplot(), nlmixr2plot::traceplot()
✖ rxode2::yeoJohnson() masks nlmixr2est::yeoJohnson()
>
> test_check("nlmixr2")
Saving _problems/test-ini-pipe-24.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-ini-pipe.R:22:3'): ini piping ────────────────────────────────
`ini(model, etalka ~ 1)` threw an error.
Message: numbers of columns of arguments do not match
Class: simpleError/error/condition
Backtrace:
▆
1. ├─base::suppressMessages(expect_error(ini(model, etalka ~ 1), NA)) at test-ini-pipe.R:22:3
2. │ └─base::withCallingHandlers(...)
3. ├─testthat::expect_error(ini(model, etalka ~ 1), NA)
4. │ └─testthat:::quasi_capture(...)
5. │ ├─testthat (local) .capture(...)
6. │ │ └─base::withCallingHandlers(...)
7. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
8. ├─rxode2::ini(model, etalka ~ 1)
9. └─rxode2:::ini.default(model, etalka ~ 1)
10. └─base::lapply(...)
11. └─rxode2 (local) FUN(X[[i]], ...)
12. └─rxode2::.iniHandleLine(...)
13. └─rxode2:::.iniHandleFixOrUnfixEqual(...)
14. └─rxode2:::.addVariableToIniDf(...)
15. ├─base::assign("iniDf", rbind(.iniDf, .extra), envir = rxui)
16. └─base::rbind(.iniDf, .extra)
17. └─base::rbind(deparse.level, ...)
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 5 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR