* installing *source* package ‘nirs4alldatasets’ ...
** this is package ‘nirs4alldatasets’ version ‘0.2.0’
** package ‘nirs4alldatasets’ successfully unpacked and MD5 sums checked
** using staged installation
nirs4alldatasets configure: using bundled vendored Rust tree (offline build)
vendored crates : /data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/rust/vendored
cargo vendor : /data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/rust/vendor.tar.xz (extracted by src/Makevars)
C ABI header : /data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/nirs4all_datasets.h
** libs
using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src'
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c n4ds.c -o n4ds.o
# Report the toolchain version to the install log (stderr) BEFORE compiling.
# R CMD check --as-cran scans the lines preceding the first "Compiling" for a
# `rustc <ver>` / `cargo <ver>` line; without it the "Rust compilation" check
# emits the "No rustc version reported prior to compilation" WARNING.
rustc 1.93.1 (01f6ddf75 2026-02-11) (Fedora 1.93.1-1.fc42)
cargo 1.93.1 (083ac5135 2025-12-15) (Fedora 1.93.1-1.fc42)
# Self-contained vendored build: extract the cargo-vendored crates.io deps
# (shipped compressed to dodge R's tarball dotfile stripping), then build the
# capi STATICLIB OFFLINE against them. The crates.io source replacement is
# passed INLINE via --config (resolves `vendor` against rust/, and ships NO
# hidden .cargo/ dir that would trip R CMD check). If vendor.tar.xz is absent
# (raw in-repo dev), fall back to an ONLINE build.
#
# CARGO_HOME=/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/.cargo keeps cargo's registry/cache out of ~/.cargo (CRAN
# Policy). CARGO_TARGET_DIR is the in-package target/ that rust_clean wipes.
# `-j 2` bounds Cargo's parallelism as required by CRAN's "Using Rust" policy
# (https://cran.r-project.org/web/packages/using_rust.html); without it Cargo
# defaults to every logical CPU on the build machine.
export CARGO_HOME="/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/.cargo" && \
export CARGO_TARGET_DIR="/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/rust/target" && \
if [ -f rust/vendor.tar.xz ]; then \
[ -d rust/vendor ] || ( echo "extracting rust/vendor.tar.xz"; cd rust && tar xJf vendor.tar.xz ); \
cd rust && cargo build -p nirs4all-datasets-capi --release -j 2 --offline \
--config 'source.crates-io.replace-with="vendored-sources"' \
--config 'source.vendored-sources.directory="vendor"'; \
else \
cd rust && cargo build -p nirs4all-datasets-capi --release -j 2; \
fi
extracting rust/vendor.tar.xz
warning: a `-j` argument was passed to Cargo but Cargo is also configured with an external jobserver in its environment, ignoring the `-j` parameter
Locking 104 packages to latest compatible versions
Compiling proc-macro2 v1.0.106
Compiling unicode-ident v1.0.24
Compiling quote v1.0.45
Compiling syn v2.0.117
Compiling synstructure v0.13.2
Compiling zerofrom-derive v0.1.7
Compiling zerofrom v0.1.8
Compiling yoke-derive v0.8.2
Compiling stable_deref_trait v1.2.1
Compiling yoke v0.8.3
Compiling zerovec-derive v0.11.3
Compiling zerovec v0.11.6
Compiling displaydoc v0.2.6
Compiling libc v0.2.186
Compiling tinystr v0.8.3
Compiling cfg-if v1.0.4
Compiling find-msvc-tools v0.1.9
Compiling writeable v0.6.3
Compiling shlex v2.0.1
Compiling litemap v0.8.2
Compiling icu_locale_core v2.2.0
Compiling cc v1.2.64
Compiling zerotrie v0.2.4
Compiling potential_utf v0.1.5
Compiling icu_normalizer_data v2.2.0
Compiling icu_properties_data v2.2.0
Compiling utf8_iter v1.0.4
Compiling version_check v0.9.5
Compiling icu_collections v2.2.0
Compiling generic-array v0.14.7
Compiling icu_provider v2.2.0
Compiling ring v0.17.14
Compiling zeroize v1.8.2
Compiling rustls-pki-types v1.14.1
Compiling typenum v1.20.1
Compiling smallvec v1.15.2
Compiling icu_normalizer v2.2.0
Compiling icu_properties v2.2.0
Compiling getrandom v0.2.17
Compiling crc32fast v1.5.0
Compiling untrusted v0.9.0
Compiling serde_core v1.0.228
Compiling idna_adapter v1.2.2
Compiling simd-adler32 v0.3.9
Compiling zmij v1.0.21
Compiling rustls v0.23.40
Compiling adler2 v2.0.1
Compiling percent-encoding v2.3.2
Compiling form_urlencoded v1.2.2
Compiling miniz_oxide v0.8.9
Compiling idna v1.1.0
Compiling rustls-webpki v0.103.13
Compiling block-buffer v0.10.4
Compiling crypto-common v0.1.7
Compiling webpki-roots v1.0.7
Compiling thiserror v2.0.18
Compiling option-ext v0.2.0
Compiling once_cell v1.21.4
Compiling serde_json v1.0.150
Compiling hashbrown v0.17.1
Compiling subtle v2.6.1
Compiling equivalent v1.0.2
Compiling serde v1.0.228
Compiling log v0.4.32
Compiling dirs-sys v0.4.1
Compiling indexmap v2.14.0
Compiling webpki-roots v0.26.11
Compiling digest v0.10.7
Compiling flate2 v1.1.9
Compiling url v2.5.8
Compiling thiserror-impl v2.0.18
Compiling serde_derive v1.0.228
Compiling memchr v2.8.2
Compiling base64 v0.22.1
Compiling itoa v1.0.18
Compiling cpufeatures v0.2.17
Compiling sha2 v0.10.9
Compiling directories v5.0.1
Compiling ureq v2.12.1
Compiling hex v0.4.3
Compiling nirs4all-datasets-core v0.2.0 (/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/rust/vendored/nirs4all-datasets-core)
Compiling nirs4all-datasets-capi v0.2.0 (/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/rust/vendored/nirs4all-datasets-capi)
Finished `release` profile [optimized] target(s) in 3m 55s
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o nirs4alldatasets.so n4ds.o /data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src/rust/target/release/libnirs4all_datasets_capi.a
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets/src'
installing to /data/gannet/ripley/R/packages/tests-devel/nirs4alldatasets.Rcheck/00LOCK-nirs4alldatasets/00new/nirs4alldatasets/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (nirs4alldatasets)