* installing *source* package ‘networkABC’ ...
** package ‘networkABC’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/networkABC/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c R_init_networkABC.c -o R_init_networkABC.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c abc_R.c -o abc_R.o
abc_R.c: In function 'label_non_hubs':
abc_R.c:554:46: warning: 'position' may be used uninitialized [-Wmaybe-uninitialized]
  554 |                         if(graph->edges[nodes[position]][nodes[j]]!=0 || graph->edges[nodes[j]][nodes[position]]!=0) {
      |                                              ^
abc_R.c:521:19: note: 'position' was declared here
  521 |         int i, j, position;             //num_connections, removed definition due to warning: unused variable 'num_connections' [-Wunused-variable]
      |                   ^~~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c graph.c -o graph.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c motif.c -o motif.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c network_random_R.c -o network_random_R.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c pool.c -o pool.o
pool.c: In function 'createMotif':
pool.c:46:16: warning: 'graph' may be used uninitialized [-Wmaybe-uninitialized]
   46 |         return graph;
      |                ^~~~~
pool.c:23:17: note: 'graph' was declared here
   23 |          Graph *graph;
      |                 ^~~~~
pool.c: In function 'createPool':
pool.c:96:25: warning: 'graph' may be used uninitialized [-Wmaybe-uninitialized]
   96 |                 if(graph->clustering_coefficient<CM && graph->number_of_vertices>2) {
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
pool.c:63:16: note: 'graph' was declared here
   63 |         Graph *graph;
      |                ^~~~~
pool.c: In function 'createPoolof3Motifs':
pool.c:160:25: warning: 'graph' may be used uninitialized [-Wmaybe-uninitialized]
  160 |                 if(graph->clustering_coefficient<CM && graph->number_of_vertices>2) {
      |                    ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
pool.c:119:16: note: 'graph' was declared here
  119 |         Graph *graph;
      |                ^~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c utils.c -o utils.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o networkABC.so R_init_networkABC.o abc_R.o graph.o motif.o network_random_R.o pool.o utils.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/networkABC/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/networkABC/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/networkABC/src'
installing to /data/gannet/ripley/R/packages/tests-devel/networkABC.Rcheck/00LOCK-networkABC/00new/networkABC/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (networkABC)