* installing *source* package ‘ncvreg’ ...
** package ‘ncvreg’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ncvreg/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c cox-dh.c -o cox-dh.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c gaussian.c -o gaussian.o
gaussian.c: In function 'cdfit_gaussian':
gaussian.c:118:56: warning: 'cutoff' may be used uninitialized [-Wmaybe-uninitialized]
118 | for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
gaussian.c:76:10: note: 'cutoff' was declared here
76 | double cutoff, l1, l2;
| ^~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c glm.c -o glm.o
glm.c: In function 'cdfit_glm':
glm.c:152:56: warning: 'cutoff' may be used uninitialized [-Wmaybe-uninitialized]
152 | for (int j=0; j<p; j++) if (fabs(z[j]) > (cutoff * alpha * m[j])) e2[j] = 1;
| ~~~~~~~^~~~~~~
glm.c:91:42: note: 'cutoff' was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~~~~~
glm.c:200:24: warning: 'si' may be used uninitialized [-Wmaybe-uninitialized]
200 | max_change = fabs(si)*xwx/n;
| ^~~~~~~~
glm.c:91:65: note: 'si' was declared here
91 | double xwr, xwx, mu, u, v, max_change, cutoff, l1, l2, shift, si;
| ^~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c maxprod.c -o maxprod.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mfdr_binomial.c -o mfdr_binomial.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mfdr_cox.c -o mfdr_cox.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mfdr_gaussian.c -o mfdr_gaussian.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c ncvreg_init.c -o ncvreg_init.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rawfit_gaussian.c -o rawfit_gaussian.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c standardize.c -o standardize.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o ncvreg.so cox-dh.o gaussian.o glm.o maxprod.o mfdr_binomial.o mfdr_cox.o mfdr_gaussian.o ncvreg_init.o rawfit_gaussian.o standardize.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ncvreg/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/ncvreg/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/ncvreg/src'
installing to /data/gannet/ripley/R/packages/tests-devel/ncvreg.Rcheck/00LOCK-ncvreg/00new/ncvreg/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (ncvreg)