* installing *source* package ‘mvnfast’ ...
** package ‘mvnfast’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mvnfast/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dmixtCpp.cpp -o dmixtCpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dmvtCpp.cpp -o dmvtCpp.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mahaCpp.cpp -o mahaCpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c msCpp.cpp -o msCpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rmixnCpp.cpp -o rmixnCpp.o
In file included from mvnfast.h:9,
from dmixtCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
dmixtCpp.cpp: In function 'SEXPREC* dmixtCpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
dmixtCpp.cpp:65:18: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
65 | if( A.nrow() != n ) Rcpp::stop("A.nrow() != n");
| ~~~~~~~~~^~~~
dmixtCpp.cpp:66:18: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
66 | if( A.ncol() != m ) Rcpp::stop("A.ncol() != m");
| ~~~~~~~~~^~~~
dmixtCpp.cpp:83:24: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
83 | for(int ii = 0; ii < m; ii++)
| ~~~^~~
dmixtCpp.cpp:100:27: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
100 | for(int imix = 0; imix<m; imix++)
| ~~~~^~
dmixtCpp.cpp:108:23: warning: comparison of integer expressions of different signedness: 'int' and 'uint32_t' {aka 'unsigned int'} [-Wsign-compare]
108 | for(int ii = 0; ii<n; ii++)
| ~~^~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rmixtCpp.cpp -o rmixtCpp.o
In file included from mvnfast.h:9,
from dmvtCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
In file included from mvnfast.h:9,
from mahaCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
In file included from mvnfast.h:9,
from msCpp.cpp:21:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rmvnCpp.cpp -o rmvnCpp.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/BH/include' -I/usr/local/include -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rmvtCpp.cpp -o rmvtCpp.o
In file included from mvnfast.h:9,
from rmixnCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
rmixnCpp.cpp: In function 'SEXPREC* rmixnCpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
rmixnCpp.cpp:55:10: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
55 | if(d != A.ncol()) stop("mu.n_cols != A.ncol()");
| ~~^~~~~~~~~~~
rmixnCpp.cpp:56:10: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
56 | if(n != A.nrow()) stop("n != A.nrow()");
| ~~^~~~~~~~~~~
rmixnCpp.cpp:75:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
75 | for(int ii = 0; ii < m; ii++)
| ~~~^~~
In file included from mvnfast.h:9,
from rmixtCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
rmixtCpp.cpp: In function 'SEXPREC* rmixtCpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
rmixtCpp.cpp:58:10: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
58 | if(d != A.ncol()) stop("mu.n_cols != A.ncol()");
| ~~^~~~~~~~~~~
rmixtCpp.cpp:59:10: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
59 | if(n != A.nrow()) stop("n != A.nrow()");
| ~~^~~~~~~~~~~
rmixtCpp.cpp:78:24: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare]
78 | for(int ii = 0; ii < m; ii++)
| ~~~^~~
In file included from mvnfast.h:9,
from rmvnCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
rmvnCpp.cpp: In function 'SEXPREC* rmvnCpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
rmvnCpp.cpp:52:12: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
52 | if(d != A.ncol()) stop("mu.n_elem != A.ncol()");
| ~~^~~~~~~~~~~
rmvnCpp.cpp:53:12: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
53 | if(n != A.nrow()) stop("n != A.nrow()");
| ~~^~~~~~~~~~~
In file included from mvnfast.h:9,
from rmvtCpp.cpp:20:
sitmo/sitmo.hpp: In member function 'void sitmo::prng_engine::discard(uint64_t)':
sitmo/sitmo.hpp:224:9: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int' [-Wsign-compare]
224 | if (z < 8 - _o_counter) {
| ~~^~~~~~~~~~~~~~~~
rmvtCpp.cpp: In function 'SEXPREC* rmvtCpp(SEXP, SEXP, SEXP, SEXP, SEXP, SEXP, SEXP)':
rmvtCpp.cpp:55:10: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'int' [-Wsign-compare]
55 | if(d != A.ncol()) stop("mu.n_elem != A.ncol()");
| ~~^~~~~~~~~~~
rmvtCpp.cpp:56:10: warning: comparison of integer expressions of different signedness: 'uint32_t' {aka 'unsigned int'} and 'int' [-Wsign-compare]
56 | if(n != A.nrow()) stop("n != A.nrow()");
| ~~^~~~~~~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o mvnfast.so dmixtCpp.o dmvtCpp.o init.o mahaCpp.o msCpp.o rmixnCpp.o rmixtCpp.o rmvnCpp.o rmvtCpp.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mvnfast/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mvnfast/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mvnfast/src'
installing to /data/gannet/ripley/R/packages/tests-devel/mvnfast.Rcheck/00LOCK-mvnfast/00new/mvnfast/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mvnfast)