* installing *source* package ‘modelSelection’ ...
** this is package ‘modelSelection’ version ‘1.0.3’
** package ‘modelSelection’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/modelSelection/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Polynomial.cpp -o Polynomial.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c PolynomialRootFinder.cpp -o PolynomialRootFinder.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c covariancemat.cpp -o covariancemat.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c crossprodmat.cpp -o crossprodmat.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cstat.cpp -o cstat.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ggm.cpp -o ggm.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glm.cpp -o glm.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c marginalLikelihood.cpp -o marginalLikelihood.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c mixtures.cpp -o mixtures.o
ggm.cpp: In function ‘void GGMrow_marg_regression(double*, arma::mat*, arma::mat*, arma::mat*, arma::SpMat<short int>*, unsigned int, ggmObject*, arma::mat*, arma::mat*, arma::SpMat<short int>*)’:
ggm.cpp:2228:42: warning: ‘XtX_newcol’ may be used uninitialized [-Wmaybe-uninitialized]
2228 | if (row_added != -1) free_dvector(XtX_newcol, 0, cholXtXinv.n_cols);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ggm.cpp:2192:15: note: ‘XtX_newcol’ was declared here
2192 | double *XtX_newcol;
| ^~~~~~~~~~
ggm.cpp: In function ‘void GGMrow_marg(double*, arma::mat*, arma::mat*, arma::mat*, arma::SpMat<short int>*, unsigned int, ggmObject*, arma::mat*, arma::mat*, arma::SpMat<short int>*)’:
ggm.cpp:2062:42: warning: ‘U_newcol’ may be used uninitialized [-Wmaybe-uninitialized]
2062 | if (row_added != -1) free_dvector(U_newcol, 0, cholUinv->n_cols);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ggm.cpp:2024:15: note: ‘U_newcol’ was declared here
2024 | double *U_newcol;
| ^~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c modelSel_regression.cpp -o modelSel_regression.o
ggm.cpp: In function ‘void unique_model_logprob(arma::SpMat<short int>*, std::vector<double>*, std::map<std::__cxx11::basic_string<char>, double>*, arma::SpMat<short int>*, arma::mat*, double*, double*)’:
ggm.cpp:1291:35: warning: ‘logmaxratio’ may be used uninitialized [-Wmaybe-uninitialized]
1291 | (*unique_logprob)[i]= max_xy(modelids_logprob[idx] - maxprob, - logmaxratio); //truncate probabilities according to maxratio
| ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ggm.cpp:1247:30: note: ‘logmaxratio’ was declared here
1247 | double maxprob= -INFINITY, logmaxratio;
| ^~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c modselFunction.cpp -o modselFunction.o
modselFunction.cpp: In member function ‘double modselFunction::laplaceapprox(double*, double*, double**, double**, bool, std::map<std::__cxx11::basic_string<char>, double*>*)’:
modselFunction.cpp:737:33: warning: ‘mycholH’ may be used uninitialized [-Wmaybe-uninitialized]
737 | if (cholH== NULL) free_dmatrix(mycholH, 1,this->thlength,1,this->thlength);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
modselFunction.cpp:709:26: note: ‘mycholH’ was declared here
709 | double ans, logdetH, **mycholH;
| ^~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c modselIntegrals.cpp -o modselIntegrals.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -DARMA_USE_CURRENT -DARMA_USE_OPENMP -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c survival.cpp -o survival.o
modelSel_regression.cpp: In function ‘void posteriorprec_update_lm(bool*, arma::mat*, arma::mat*, double*, arma::mat*, arma::mat*, arma::SpMat<short int>*, arma::SpMat<short int>*, lmObject*)’:
modelSel_regression.cpp:2404:38: warning: ‘Vinv_newcol’ may be used uninitialized [-Wmaybe-uninitialized]
2404 | if (row_added != -1) free_dvector(Vinv_newcol, 0, nrows - 1);
| ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
modelSel_regression.cpp:2341:11: note: ‘Vinv_newcol’ was declared here
2341 | double *Vinv_newcol;
| ^~~~~~~~~~~
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o modelSelection.so Polynomial.o PolynomialRootFinder.o RcppExports.o covariancemat.o crossprodmat.o cstat.o ggm.o glm.o marginalLikelihood.o mixtures.o modelSel_regression.o modselFunction.o modselIntegrals.o survival.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/modelSelection/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/modelSelection/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/modelSelection/src'
installing to /data/gannet/ripley/R/packages/tests-devel/modelSelection.Rcheck/00LOCK-modelSelection/00new/modelSelection/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (modelSelection)