• using R Under development (unstable) (2026-04-22 r89950)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)     GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8 * current time: 2026-04-23 08:53:51 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘mmrm/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘mmrm’ version ‘0.3.17’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘mmrm’ can be installed ... [19m/21m] OK See the install log for details.
• used C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [28s/28s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [10s/13s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [131s/375s] ERROR   Running ‘additional.R’ [26s/79s]   Running ‘testthat.R’ [104s/295s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > pkg_name <- "mmrm"   > library(pkg_name, character.only = TRUE)   > testthat::test_check(pkg_name)   In AVISIT there are dropped visits: VIS4.    Additional attributes including contrasts are lost.   To avoid this behavior, make sure use `drop_visit_levels = FALSE`.   Welcome to emmeans.   Caution: You lose important information if you filter this package's results.   See '? untidy'   Saving _problems/test-empirical-486.R   Saving _problems/test-empirical-520.R   Saving _problems/test-empirical-554.R   Saving _problems/test-empirical-588.R   Saving _problems/test-empirical-622.R   Saving _problems/test-empirical-656.R   Loading required package: carData   -- Model Registration ------------------------------------------- mmrm 0.3.17 --   v mmrm::mmrm()   [ FAIL 6 | WARN 0 | SKIP 51 | PASS 2050 ]      ══ Skipped tests (51) ══════════════════════════════════════════════════════════   • On CRAN (50): 'test-between-within.R:23:1', 'test-emmeans.R:115:1',     'test-empirical.R:3:1', 'test-empirical.R:15:1', 'test-empirical.R:27:1',     'test-fit.R:282:3', 'test-fit.R:412:3', 'test-fit.R:559:1',     'test-interop-car.R:214:1', 'test-interop-car.R:237:1',     'test-interop-car.R:304:1', 'test-kenwardroger.R:2:1',     'test-kenwardroger.R:12:1', 'test-kenwardroger.R:22:1',     'test-kenwardroger.R:32:1', 'test-kenwardroger.R:42:1',     'test-kenwardroger.R:52:1', 'test-kenwardroger.R:62:1',     'test-kenwardroger.R:72:1', 'test-kenwardroger.R:82:1',     'test-kenwardroger.R:92:1', 'test-kenwardroger.R:102:1',     'test-kenwardroger.R:112:1', 'test-kenwardroger.R:122:1',     'test-kenwardroger.R:132:1', 'test-kenwardroger.R:142:1',     'test-kenwardroger.R:152:1', 'test-kenwardroger.R:162:1',     'test-kenwardroger.R:172:1', 'test-kenwardroger.R:182:1',     'test-kenwardroger.R:192:1', 'test-kenwardroger.R:490:1',     'test-kenwardroger.R:498:1', 'test-kenwardroger.R:512:1',     'test-kenwardroger.R:530:1', 'test-kenwardroger.R:542:1',     'test-mmrm-methods.R:78:1', 'test-mmrm-methods.R:94:1',     'test-mmrm-methods.R:100:1', 'test-mmrm-methods.R:106:1',     'test-mmrm-methods.R:112:1', 'test-mmrm-methods.R:119:1',     'test-testing.R:78:1', 'test-testing.R:92:1', 'test-tmb-methods.R:142:1',     'test-tmb-methods.R:179:1', 'test-tmb-methods.R:351:1',     'test-tmb-methods.R:913:1', 'test-tmb-methods.R:1081:1',     'test-tmb-methods.R:1088:1'   • empty test (1):      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-empirical.R:486:3'): Empirical works as expected for ar1 ───────   Error in `as.data.frame.default(data, optional = TRUE)`: cannot coerce class 'c("objectNotFoundError", "error", "condition")' to a data.frame   Backtrace:        ▆     1. ├─clubSandwich::vcovCR(fit_gls, type = "CR0") at test-empirical.R:486:3     2. └─clubSandwich:::vcovCR.gls(fit_gls, type = "CR0")     3. └─clubSandwich:::vcov_CR(...)     4. ├─clubSandwich:::model_matrix(obj)     5. └─clubSandwich:::model_matrix.gls(obj)     6. ├─stats::model.matrix(formula(obj), data = dat)     7. └─stats::model.matrix.default(formula(obj), data = dat)     8. ├─stats::terms(object, data = data)     9. └─stats::terms.formula(object, data = data)    10. ├─base::as.data.frame(data, optional = TRUE)    11. └─base::as.data.frame.default(data, optional = TRUE)   ── Error ('test-empirical.R:520:3'): Empirical works as expected for weighted ar1 ──   Error in `as.data.frame.default(data, optional = TRUE)`: cannot coerce class 'c("objectNotFoundError", "error", "condition")' to a data.frame   Backtrace:        ▆     1. ├─clubSandwich::vcovCR(fit_gls, type = "CR0") at test-empirical.R:520:3     2. └─clubSandwich:::vcovCR.gls(fit_gls, type = "CR0")     3. └─clubSandwich:::vcov_CR(...)     4. ├─clubSandwich:::model_matrix(obj)     5. └─clubSandwich:::model_matrix.gls(obj)     6. ├─stats::model.matrix(formula(obj), data = dat)     7. └─stats::model.matrix.default(formula(obj), data = dat)     8. ├─stats::terms(object, data = data)     9. └─stats::terms.formula(object, data = data)    10. ├─base::as.data.frame(data, optional = TRUE)    11. └─base::as.data.frame.default(data, optional = TRUE)   ── Error ('test-empirical.R:554:3'): Jackknife works as expected for ar1 ───────   Error in `as.data.frame.default(data, optional = TRUE)`: cannot coerce class 'c("objectNotFoundError", "error", "condition")' to a data.frame   Backtrace:        ▆     1. ├─clubSandwich::vcovCR(fit_gls, type = "CR3") at test-empirical.R:554:3     2. └─clubSandwich:::vcovCR.gls(fit_gls, type = "CR3")     3. └─clubSandwich:::vcov_CR(...)     4. ├─clubSandwich:::model_matrix(obj)     5. └─clubSandwich:::model_matrix.gls(obj)     6. ├─stats::model.matrix(formula(obj), data = dat)     7. └─stats::model.matrix.default(formula(obj), data = dat)     8. ├─stats::terms(object, data = data)     9. └─stats::terms.formula(object, data = data)    10. ├─base::as.data.frame(data, optional = TRUE)    11. └─base::as.data.frame.default(data, optional = TRUE)   ── Error ('test-empirical.R:588:3'): Jackknife works as expected for weighted ar1 ──   Error in `as.data.frame.default(data, optional = TRUE)`: cannot coerce class 'c("objectNotFoundError", "error", "condition")' to a data.frame   Backtrace:        ▆     1. ├─clubSandwich::vcovCR(fit_gls, type = "CR3") at test-empirical.R:588:3     2. └─clubSandwich:::vcovCR.gls(fit_gls, type = "CR3")     3. └─clubSandwich:::vcov_CR(...)     4. ├─clubSandwich:::model_matrix(obj)     5. └─clubSandwich:::model_matrix.gls(obj)     6. ├─stats::model.matrix(formula(obj), data = dat)     7. └─stats::model.matrix.default(formula(obj), data = dat)     8. ├─stats::terms(object, data = data)     9. └─stats::terms.formula(object, data = data)    10. ├─base::as.data.frame(data, optional = TRUE)    11. └─base::as.data.frame.default(data, optional = TRUE)   ── Error ('test-empirical.R:622:3'): Bias-Reduced works as expected for ar1 ────   Error in `as.data.frame.default(data, optional = TRUE)`: cannot coerce class 'c("objectNotFoundError", "error", "condition")' to a data.frame   Backtrace:        ▆     1. ├─clubSandwich::vcovCR(fit_gls, type = "CR2") at test-empirical.R:622:3     2. └─clubSandwich:::vcovCR.gls(fit_gls, type = "CR2")     3. └─clubSandwich:::vcov_CR(...)     4. ├─clubSandwich:::model_matrix(obj)     5. └─clubSandwich:::model_matrix.gls(obj)     6. ├─stats::model.matrix(formula(obj), data = dat)     7. └─stats::model.matrix.default(formula(obj), data = dat)     8. ├─stats::terms(object, data = data)     9. └─stats::terms.formula(object, data = data)    10. ├─base::as.data.frame(data, optional = TRUE)    11. └─base::as.data.frame.default(data, optional = TRUE)   ── Error ('test-empirical.R:656:3'): Bias-Reduced works as expected for weighted ar1 ──   Error in `as.data.frame.default(data, optional = TRUE)`: cannot coerce class 'c("objectNotFoundError", "error", "condition")' to a data.frame   Backtrace:        ▆     1. ├─clubSandwich::vcovCR(fit_gls, type = "CR2") at test-empirical.R:656:3     2. └─clubSandwich:::vcovCR.gls(fit_gls, type = "CR2")     3. └─clubSandwich:::vcov_CR(...)     4. ├─clubSandwich:::model_matrix(obj)     5. └─clubSandwich:::model_matrix.gls(obj)     6. ├─stats::model.matrix(formula(obj), data = dat)     7. └─stats::model.matrix.default(formula(obj), data = dat)     8. ├─stats::terms(object, data = data)     9. └─stats::terms.formula(object, data = data)    10. ├─base::as.data.frame(data, optional = TRUE)    11. └─base::as.data.frame.default(data, optional = TRUE)      [ FAIL 6 | WARN 0 | SKIP 51 | PASS 2050 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [92s/246s] OK
• checking PDF version of manual ... [15s/26s] OK
• checking HTML version of manual ... [18s/38s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR