• using R Under development (unstable) (2026-09-17 r90555)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)     GNU Fortran (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-09-17 13:29:22 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘midasINLA/DESCRIPTION’ ... OK
• this is package ‘midasINLA’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘midasINLA’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [7s/13s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/14s] ERROR Running examples in ‘midasINLA-Ex.R’ failed The error most likely occurred in: > ### Name: compute_beta_spatial > ### Title: Compute posterior summaries of MIDAS coefficients > ### Aliases: compute_beta_spatial > > ### ** Examples > > if (requireNamespace("INLA", quietly = TRUE)) { + INLA::inla.setOption(num.threads = 1) + + data(data_spatialpoisson_example) + + # Read the spatial adjacency graph + g <- INLA::inla.read.graph( + filename = system.file("map.adj", package = "midasINLA") + ) + + # Prepare a spatial MIDAS predictor + Midas_x1 <- prepare_Minla_spatial( + x = data_spatialpoisson_example$data_x1$x1, + loc_x = data_spatialpoisson_example$data_x1$loc, + constraint = "hyperbolic", + K = 0:29, + m = 30, + svc = TRUE, + svc_prior = "icar", + g = g + ) + + # Fit the spatial Poisson MIDAS model + fit <- fit_Minla_spatial( + formula = y ~ 1, + data = data_spatialpoisson_example$data_y, + loc_var = "loc", + time_var = "Time", + family = "poisson", + hf_input = list(Midas_x1), + inla_options = list( + verbose = FALSE, + control.predictor = list( + compute = TRUE, + link = 1 + ) + ) + ) + + # Compute posterior summaries of the MIDAS coefficients + beta_summary <- compute_beta_spatial( + model = fit, + n_loc = 16 + ) + + # Inspect summaries of the location-specific total coefficients + beta_summary$hf_index_1$summary.total.beta + } During startup - There were 13 warnings (use warnings() to see them) Error: .onLoad failed in loadNamespace() for 'Rcpp', details:   call: dyn.load(file, DLLpath = DLLpath, ...)   error: unable to load shared object '/data/localhost/ripley/R/R-devel/library/tools/libs/tools.so':   /data/localhost/ripley/R/R-devel/library/tools/libs/tools.so: undefined symbol: Rf_strchr_const In addition: Warning messages: 1: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 2: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 3: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 4: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar"  *** ERROR *** rgeneric [initial] with model [.inla.rgeneric.model.hf_idx_1] failed  *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1 During startup - There were 13 warnings (use warnings() to see them) Error: .onLoad failed in loadNamespace() for 'Rcpp', details:   call: dyn.load(file, DLLpath = DLLpath, ...)   error: unable to load shared object '/data/localhost/ripley/R/R-devel/library/tools/libs/tools.so':   /data/localhost/ripley/R/R-devel/library/tools/libs/tools.so: undefined symbol: Rf_strchr_const In addition: Warning messages: 1: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 2: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 3: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 4: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar"  *** ERROR *** rgeneric [initial] with model [.inla.rgeneric.model.hf_idx_1] failed Error in inla.core.safe(formula = formula, family = family, contrasts = contrasts, :   The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.   If this does not help, please contact the developers at <help@r-inla.org>. The inla program failed and the maximum number of tries has been reached. Calls: fit_Minla_spatial -> do.call -> <Anonymous> -> inla.core.safe Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [7s/16s] ERROR   Running ‘testthat.R’ [7s/15s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(midasINLA)   >   > test_check("midasINLA")   During startup - There were 13 warnings (use warnings() to see them)   Error: .onLoad failed in loadNamespace() for 'Rcpp', details:     call: dyn.load(file, DLLpath = DLLpath, ...)     error: unable to load shared object '/data/localhost/ripley/R/R-devel/library/tools/libs/tools.so':     /data/localhost/ripley/R/R-devel/library/tools/libs/tools.so: undefined symbol: Rf_strchr_const   In addition: Warning messages:   1: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"   2: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"   3: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"   4: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"       *** ERROR *** rgeneric [initial] with model [.inla.rgeneric.model.hf_idx_1] failed       *** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1   During startup - There were 13 warnings (use warnings() to see them)   Error: .onLoad failed in loadNamespace() for 'Rcpp', details:     call: dyn.load(file, DLLpath = DLLpath, ...)     error: unable to load shared object '/data/localhost/ripley/R/R-devel/library/tools/libs/tools.so':     /data/localhost/ripley/R/R-devel/library/tools/libs/tools.so: undefined symbol: Rf_strchr_const   In addition: Warning messages:   1: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"   2: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"   3: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"   4: In genericForBasic(f, mustFind = FALSE) :     unrecognized internal function name "cumvar"       *** ERROR *** rgeneric [initial] with model [.inla.rgeneric.model.hf_idx_1] failed   Saving _problems/test-functions-72.R   [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-functions.R:62:3'): check workflow ─────────────────────────────   Error in `inla.core.safe(formula = formula, family = family, contrasts = contrasts, data = data, quantiles = quantiles, E = E, offset = offset, scale = scale, weights = weights, Ntrials = Ntrials, strata = strata, lp.scale = lp.scale, link.covariates = link.covariates, verbose = verbose, lincomb = lincomb, selection = selection, control.compute = control.compute, control.predictor = control.predictor, control.family = control.family, control.inla = control.inla, control.fixed = control.fixed, control.mode = control.mode, control.expert = control.expert, control.hazard = control.hazard, control.lincomb = control.lincomb, control.update = control.update, control.lp.scale = control.lp.scale, control.pardiso = control.pardiso, control.stiles = control.stiles, control.taucs = control.taucs, control.numa = control.numa, only.hyperparam = only.hyperparam, inla.call = inla.call, inla.arg = inla.arg, num.threads = num.threads, keep = keep, working.directory = working.directory, silent = silent, inla.mode = inla.mode, safe = FALSE, debug = debug, .parent.frame = .parent.frame)`: The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.     If this does not help, please contact the developers at <help@r-inla.org>.   The inla program failed and the maximum number of tries has been reached.   Backtrace:       ▆    1. └─midasINLA::fit_Minla_spatial(...) at test-functions.R:62:3    2. ├─base::do.call(INLA::inla, args_inla)    3. └─INLA (local) `<fn>`(...)    4. └─INLA:::inla.core.safe(...)      [ FAIL 1 | WARN 0 | SKIP 0 | PASS 7 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [14s/30s] ERROR Error(s) in re-building vignettes: --- re-building ‘midasINLA.Rmd’ using rmarkdown During startup - There were 13 warnings (use warnings() to see them) Error: .onLoad failed in loadNamespace() for 'Rcpp', details:   call: dyn.load(file, DLLpath = DLLpath, ...)   error: unable to load shared object '/data/localhost/ripley/R/R-devel/library/tools/libs/tools.so':   /data/localhost/ripley/R/R-devel/library/tools/libs/tools.so: undefined symbol: Rf_strchr_const In addition: Warning messages: 1: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 2: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 3: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 4: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar"  *** ERROR *** rgeneric [initial] with model [.inla.rgeneric.model.hf_idx_1] failed During startup - There were 13 warnings (use warnings() to see them) Error: .onLoad failed in loadNamespace() for 'Rcpp', details:   call: dyn.load(file, DLLpath = DLLpath, ...)   error: unable to load shared object '/data/localhost/ripley/R/R-devel/library/tools/libs/tools.so':   /data/localhost/ripley/R/R-devel/library/tools/libs/tools.so: undefined symbol: Rf_strchr_const In addition: Warning messages: 1: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 2: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 3: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar" 4: In genericForBasic(f, mustFind = FALSE) :   unrecognized internal function name "cumvar"  *** ERROR *** rgeneric [initial] with model [.inla.rgeneric.model.hf_idx_1] failed Quitting from midasINLA.Rmd:282-293 [fit-model] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `inla.core.safe()`: ! The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.   If this does not help, please contact the developers at <help@r-inla.org>. The inla program failed and the maximum number of tries has been reached. --- Backtrace:     ▆  1. └─midasINLA::fit_Minla_spatial(...)  2. ├─base::do.call(INLA::inla, args_inla)  3. └─INLA (local) `<fn>`(...)  4. └─INLA:::inla.core.safe(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'midasINLA.Rmd' failed with diagnostics: The inla-program exited with an error. Unless you interupted it yourself, please rerun with verbose=TRUE and check the output carefully.   If this does not help, please contact the developers at <help@r-inla.org>. The inla program failed and the maximum number of tries has been reached. --- failed re-building ‘midasINLA.Rmd’ SUMMARY: processing the following file failed:   ‘midasINLA.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 3 ERRORs