* installing *source* package ‘memisc’ ...
** package ‘memisc’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/memisc/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dta-for-R.c -o dta-for-R.o
dta-for-R.c: In function 'get_dta_file':
dta-for-R.c:62:10: warning: unused variable 'name' [-Wunused-variable]
62 | SEXP name = getAttrib(s_file,install("file.name"));
| ^~~~
dta-for-R.c: In function 'dta_read_version':
dta-for-R.c:171:7: warning: unused variable 'ret' [-Wunused-variable]
171 | int ret = fread(&ds_format,1,1,dtaf->f);
| ^~~
dta-for-R.c: In function 'dta_read_header':
dta-for-R.c:189:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
189 | int ret = fread(&byteorder,1,1,dtaf->f);
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dta117-for-R.c -o dta117-for-R.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dumbswap.c -o dumbswap.o
dta117-for-R.c: In function 'get_dta117_file':
dta117-for-R.c:111:10: warning: unused variable 'name' [-Wunused-variable]
111 | SEXP name = getAttrib(s_file,install("file.name"));
| ^~~~
dta117-for-R.c: In function 'dta117_read_int64':
dta117-for-R.c:160:10: warning: unused variable 'read_len' [-Wunused-variable]
160 | size_t read_len = fread(&target,8,1,dtaf->f);
| ^~~~~~~~
dta117-for-R.c: In function 'assert_in_file':
dta117-for-R.c:283:7: warning: unused variable 'ret' [-Wunused-variable]
283 | int ret = fread(buf,1,n,f);
| ^~~
dta117-for-R.c: In function 'dta117_read_range':
dta117-for-R.c:321:7: warning: unused variable 'ret' [-Wunused-variable]
321 | int ret = fread(buf,1,len,f);
| ^~~
dta117-for-R.c: In function 'dta117_read_header':
dta117-for-R.c:377:7: warning: unused variable 'l_timestamp' [-Wunused-variable]
377 | int l_timestamp = timestamp[0];
| ^~~~~~~~~~~
dta117-for-R.c:376:7: warning: unused variable 'l_label' [-Wunused-variable]
376 | int l_label = label[0];
| ^~~~~~~
dta117-for-R.c:346:9: warning: unused variable 'header_end' [-Wunused-variable]
346 | off_t header_end = find_in_file(dtaf->f,"</header>",1,-1);
| ^~~~~~~~~~
dta117-for-R.c:340:9: warning: unused variable 'N_end' [-Wunused-variable]
340 | off_t N_end = find_in_file(dtaf->f,"</N>",1,-1);
| ^~~~~
dta117-for-R.c:338:9: warning: unused variable 'K_end' [-Wunused-variable]
338 | off_t K_end = find_in_file(dtaf->f,"</K>",1,-1);
| ^~~~~
dta117-for-R.c:332:9: warning: unused variable 'header_start' [-Wunused-variable]
332 | off_t header_start = find_in_file(dtaf->f,"<header>",0,-1);
| ^~~~~~~~~~~~
dta117-for-R.c: In function 'dta117_read_map':
dta117-for-R.c:412:9: warning: unused variable 'map_end' [-Wunused-variable]
412 | off_t map_end = find_in_file(dtaf->f,"</map>",1,-1);
| ^~~~~~~
dta117-for-R.c: In function 'dta117_read_vtypes':
dta117-for-R.c:439:9: warning: unused variable 'vtypes_end' [-Wunused-variable]
439 | off_t vtypes_end = find_in_file(dtaf->f,"</variable_types>",1,-1);
| ^~~~~~~~~~
dta117-for-R.c: In function 'dta117_read_vnames':
dta117-for-R.c:517:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
517 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:515:9: warning: unused variable 'vnames_end' [-Wunused-variable]
515 | off_t vnames_end = find_in_file(dtaf->f,"</varnames>",1,-1);
| ^~~~~~~~~~
dta117-for-R.c: In function 'dta117_read_sortlist':
dta117-for-R.c:544:9: warning: unused variable 'slist_end' [-Wunused-variable]
544 | off_t slist_end = find_in_file(dtaf->f,"</sortlist>",1,-1);
| ^~~~~~~~~
dta117-for-R.c: In function 'dta117_read_formats':
dta117-for-R.c:570:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
570 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:568:9: warning: unused variable 'formats_end' [-Wunused-variable]
568 | off_t formats_end = find_in_file(dtaf->f,"</formats>",1,-1);
| ^~~~~~~~~~~
dta117-for-R.c: In function 'dta117_read_vlab_names':
dta117-for-R.c:596:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
596 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:594:9: warning: unused variable 'vlab_names_end' [-Wunused-variable]
594 | off_t vlab_names_end = find_in_file(dtaf->f,"</value_label_names>",1,-1);
| ^~~~~~~~~~~~~~
dta117-for-R.c: In function 'dta117_read_varlabs':
dta117-for-R.c:623:7: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
623 | int ret, i, n = dtaf->nvars;
| ^~~
dta117-for-R.c:621:9: warning: unused variable 'varlabs_end' [-Wunused-variable]
621 | off_t varlabs_end = find_in_file(dtaf->f,"</variable_labels>",1,-1);
| ^~~~~~~~~~~
dta117-for-R.c: In function 'dta117_read_vallabs':
dta117-for-R.c:648:9: warning: variable 'ret' set but not used [-Wunused-but-set-variable]
648 | off_t ret;
| ^~~
dta117-for-R.c: In function 'dta117_read_data':
dta117-for-R.c:749:10: warning: variable 'v_o' set but not used [-Wunused-but-set-variable]
749 | double v_o;
| ^~~
dta117-for-R.c: In function 'dta117_read_slice':
dta117-for-R.c:863:10: warning: variable 'v_o' set but not used [-Wunused-but-set-variable]
863 | double v_o;
| ^~~
dta117-for-R.c: In function 'dta117_read_chunk':
dta117-for-R.c:1004:10: warning: variable 'v_o' set but not used [-Wunused-but-set-variable]
1004 | double v_o;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init-memisc.c -o init-memisc.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c numeric_if_possible.c -o numeric_if_possible.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c parsehelpers.c -o parsehelpers.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pspp-portableStream-for-R.c -o pspp-portableStream-for-R.o
pspp-portableStream-for-R.c: In function 'fillPorStreamBuf':
pspp-portableStream-for-R.c:337:11: warning: unused variable 'ret' [-Wunused-variable]
337 | int ret = fread((char *)b->buf,1,BUFSIZE,b->f);
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pspp-system-for-R.c -o pspp-system-for-R.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c readfixed.c -o readfixed.o
readfixed.c: In function 'readfixed':
readfixed.c:86:10: warning: variable 'cur_len' set but not used [-Wunused-but-set-variable]
86 | size_t cur_len;
| ^~~~~~~
readfixed.c: In function 'readfixedslice':
readfixed.c:183:10: warning: variable 'cur_len' set but not used [-Wunused-but-set-variable]
183 | size_t cur_len;
| ^~~~~~~
readfixed.c: In function 'readfixedchunk':
readfixed.c:266:10: warning: variable 'cur_len' set but not used [-Wunused-but-set-variable]
266 | size_t cur_len;
| ^~~~~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rofile.c -o rofile.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fvisibility=hidden -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c update_data_frame.c -o update_data_frame.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o memisc.so dta-for-R.o dta117-for-R.o dumbswap.o init-memisc.o numeric_if_possible.o parsehelpers.o pspp-portableStream-for-R.o pspp-system-for-R.o readfixed.o rofile.o update_data_frame.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/memisc/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/memisc/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/memisc/src'
installing to /data/gannet/ripley/R/packages/tests-devel/memisc.Rcheck/00LOCK-memisc/00new/memisc/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘contrasts’ in package ‘memisc’
in method for ‘description’ with signature ‘"tbl_df"’: no definition for class “tbl_df”
in method for ‘codebook’ with signature ‘"tbl_df"’: no definition for class “tbl_df”
Creating a generic function for ‘contrasts<-’ from package ‘stats’ in package ‘memisc’
Creating a generic function for ‘as.ordered’ from package ‘base’ in package ‘memisc’
Creating a generic function for ‘as.factor’ from package ‘base’ in package ‘memisc’
Creating a generic function for ‘%in%’ from package ‘base’ in package ‘memisc’
Creating a generic function for ‘sample’ from package ‘base’ in package ‘memisc’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (memisc)