* installing *source* package ‘mdbr’ ... ** this is package ‘mdbr’ version ‘0.3.1’ ** package ‘mdbr’ successfully unpacked and MD5 sums checked ** using staged installation [mdbr] configure: checking for gmtime_r... yes [mdbr] configure: checking for strptime... no [mdbr] configure: checking for fmemopen... yes [mdbr] configure: checking for reallocf... no [mdbr] configure: done ** libs using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mdbr/src' gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdb_native.c -o mdb_native.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdb_r_stdio.c -o mdb_r_stdio.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/backend.c -o mdbtools/src/libmdb/backend.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/catalog.c -o mdbtools/src/libmdb/catalog.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/data.c -o mdbtools/src/libmdb/data.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/dump.c -o mdbtools/src/libmdb/dump.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/fakeglib.c -o mdbtools/src/libmdb/fakeglib.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/file.c -o mdbtools/src/libmdb/file.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/iconv.c -o mdbtools/src/libmdb/iconv.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/index.c -o mdbtools/src/libmdb/index.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/like.c -o mdbtools/src/libmdb/like.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/map.c -o mdbtools/src/libmdb/map.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/money.c -o mdbtools/src/libmdb/money.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/options.c -o mdbtools/src/libmdb/options.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/props.c -o mdbtools/src/libmdb/props.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/rc4.c -o mdbtools/src/libmdb/rc4.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/sargs.c -o mdbtools/src/libmdb/sargs.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/stats.c -o mdbtools/src/libmdb/stats.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/table.c -o mdbtools/src/libmdb/table.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/version.c -o mdbtools/src/libmdb/version.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/worktable.c -o mdbtools/src/libmdb/worktable.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/libmdb/write.c -o mdbtools/src/libmdb/write.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/sql/lexer.c -o mdbtools/src/sql/lexer.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/sql/mdbsql.c -o mdbtools/src/sql/mdbsql.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Imdbtools/include -DTLS=__thread -include mdb_r_stdio.h -DHAVE_GMTIME_R -DHAVE_FMEMOPEN -D_GNU_SOURCE -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mdbtools/src/sql/parser.c -o mdbtools/src/sql/parser.o gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o mdbr.so init.o mdb_native.o mdb_r_stdio.o mdbtools/src/libmdb/backend.o mdbtools/src/libmdb/catalog.o mdbtools/src/libmdb/data.o mdbtools/src/libmdb/dump.o mdbtools/src/libmdb/fakeglib.o mdbtools/src/libmdb/file.o mdbtools/src/libmdb/iconv.o mdbtools/src/libmdb/index.o mdbtools/src/libmdb/like.o mdbtools/src/libmdb/map.o mdbtools/src/libmdb/money.o mdbtools/src/libmdb/options.o mdbtools/src/libmdb/props.o mdbtools/src/libmdb/rc4.o mdbtools/src/libmdb/sargs.o mdbtools/src/libmdb/stats.o mdbtools/src/libmdb/table.o mdbtools/src/libmdb/version.o mdbtools/src/libmdb/worktable.o mdbtools/src/libmdb/write.o mdbtools/src/sql/lexer.o mdbtools/src/sql/mdbsql.o mdbtools/src/sql/parser.o make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mdbr/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mdbr/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mdbr/src' installing to /data/gannet/ripley/R/packages/tests-devel/mdbr.Rcheck/00LOCK-mdbr/00new/mdbr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mdbr)