Install log for 'mapdeck'

* installing *source* package ‘mapdeck’ ...
** package ‘mapdeck’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
using C++14
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mapdeck/src'
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c aggregate.cpp -o aggregate.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c geojson.cpp -o geojson.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c mesh.cpp -o mesh.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c od.cpp -o od.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c path.cpp -o path.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c point.cpp -o point.o
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c polygon.cpp -o polygon.o
path.cpp: In function 'SEXPREC* rcpp_path_interleaved(Rcpp::DataFrame, Rcpp::List, Rcpp::IntegerVector, int, std::string)':
path.cpp:102:13: warning: unused variable 'n_coordinates' [-Wunused-variable]
  102 |         int n_coordinates = coordinates.length();
      |             ^~~~~~~~~~~~~
g++-13 -std=gnu++14 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -DSTRICT_R_HEADERS -DBOOST_NO_AUTO_PTR -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/colourvalues/include' -I'/data/gannet/ripley/R/test-dev/geojsonsf/include' -I'/data/gannet/ripley/R/test-dev/geometries/include' -I'/data/gannet/ripley/R/test-dev/interleave/include' -I'/data/gannet/ripley/R/test-dev/jsonify/include' -I'/data/gannet/ripley/R/test-dev/rapidjsonr/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/sfheaders/include' -I'/data/gannet/ripley/R/test-dev/spatialwidget/include' -I/usr/local/include   -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c text.cpp -o text.o
g++-13 -std=gnu++14 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o mapdeck.so RcppExports.o aggregate.o geojson.o mesh.o od.o path.o point.o polygon.o text.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mapdeck/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mapdeck/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mapdeck/src'
installing to /data/gannet/ripley/R/packages/tests-devel/mapdeck.Rcheck/00LOCK-mapdeck/00new/mapdeck/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mapdeck)