* installing *source* package ‘mBvs’ ...
** package ‘mBvs’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mBvs/src'
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c MBVSfa.c -o MBVSfa.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c MBVSfa_Updates.c -o MBVSfa_Updates.o
MBVSfa_Updates.c: In function 'updateRPfa':
MBVSfa_Updates.c:108:7: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
108 | if(move == 1)
| ^
MBVSfa_Updates.c:51:59: note: 'move' was declared here
51 | int u, i, j, k, l, m, ii, kk, lInx, count, count_rev, move, putInx;
| ^~~~
MBVSfa_Updates.c:318:17: warning: 'beta_prop' may be used uninitialized [-Wmaybe-uninitialized]
318 | gsl_matrix_set(updateNonzB, l, j, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSfa_Updates.c:42:12: note: 'beta_prop' was declared here
42 | double beta_prop, res, res_prop, expTerm, expTerm1, expTerm2;
| ^~~~~~~~~
MBVSfa_Updates.c:308:48: warning: 'logPrior1' may be used uninitialized [-Wmaybe-uninitialized]
308 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
MBVSfa_Updates.c:43:12: note: 'logPrior1' was declared here
43 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~
MBVSfa_Updates.c:308:31: warning: 'logPrior1_prop' may be used uninitialized [-Wmaybe-uninitialized]
308 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
MBVSfa_Updates.c:43:23: note: 'logPrior1_prop' was declared here
43 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~~~~~~
MBVSfa_Updates.c:308:77: warning: 'logPrior2' may be used uninitialized [-Wmaybe-uninitialized]
308 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
MBVSfa_Updates.c:43:39: note: 'logPrior2' was declared here
43 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~
MBVSfa_Updates.c:308:60: warning: 'logPrior2_prop' may be used uninitialized [-Wmaybe-uninitialized]
308 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
MBVSfa_Updates.c:43:50: note: 'logPrior2_prop' was declared here
43 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~~~~~~
MBVSfa_Updates.c:308:89: warning: 'logProp' may be used uninitialized [-Wmaybe-uninitialized]
308 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
MBVSfa_Updates.c:44:12: note: 'logProp' was declared here
44 | double logProp, logProp_new, logPrior2_1, logPrior2_1prop;
| ^~~~~~~
MBVSfa_Updates.c:308:10: warning: 'logProp_new' may be used uninitialized [-Wmaybe-uninitialized]
308 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSfa_Updates.c:44:21: note: 'logProp_new' was declared here
44 | double logProp, logProp_new, logPrior2_1, logPrior2_1prop;
| ^~~~~~~~~~~
MBVSfa_Updates.c:318:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
318 | gsl_matrix_set(updateNonzB, l, j, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSfa_Updates.c:51:21: note: 'l' was declared here
51 | int u, i, j, k, l, m, ii, kk, lInx, count, count_rev, move, putInx;
| ^
MBVSfa_Updates.c:328:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
328 | gsl_matrix_set(B, m, j, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSfa_Updates.c:51:24: note: 'm' was declared here
51 | int u, i, j, k, l, m, ii, kk, lInx, count, count_rev, move, putInx;
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c MBVSus.c -o MBVSus.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c MBVSus_Updates.c -o MBVSus_Updates.o
MBVSus_Updates.c: In function 'updateRPus':
MBVSus_Updates.c:101:7: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
101 | if(move == 1)
| ^
MBVSus_Updates.c:47:59: note: 'move' was declared here
47 | int u, i, j, k, l, m, ii, kk, lInx, count, count_rev, move, putInx;
| ^~~~
MBVSus_Updates.c:304:17: warning: 'beta_prop' may be used uninitialized [-Wmaybe-uninitialized]
304 | gsl_matrix_set(updateNonzB, l, j, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSus_Updates.c:38:12: note: 'beta_prop' was declared here
38 | double beta_prop, res, res_prop, expTerm, expTerm1, expTerm2;
| ^~~~~~~~~
MBVSus_Updates.c:295:48: warning: 'logPrior1' may be used uninitialized [-Wmaybe-uninitialized]
295 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
MBVSus_Updates.c:39:12: note: 'logPrior1' was declared here
39 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~
MBVSus_Updates.c:295:31: warning: 'logPrior1_prop' may be used uninitialized [-Wmaybe-uninitialized]
295 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
MBVSus_Updates.c:39:23: note: 'logPrior1_prop' was declared here
39 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~~~~~~
MBVSus_Updates.c:295:77: warning: 'logPrior2' may be used uninitialized [-Wmaybe-uninitialized]
295 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
MBVSus_Updates.c:39:39: note: 'logPrior2' was declared here
39 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~
MBVSus_Updates.c:295:60: warning: 'logPrior2_prop' may be used uninitialized [-Wmaybe-uninitialized]
295 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
MBVSus_Updates.c:39:50: note: 'logPrior2_prop' was declared here
39 | double logPrior1, logPrior1_prop, logPrior2, logPrior2_prop;
| ^~~~~~~~~~~~~~
MBVSus_Updates.c:295:89: warning: 'logProp' may be used uninitialized [-Wmaybe-uninitialized]
295 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
MBVSus_Updates.c:40:12: note: 'logProp' was declared here
40 | double logProp, logProp_new, logPrior2_1, logPrior2_1prop;
| ^~~~~~~
MBVSus_Updates.c:295:10: warning: 'logProp_new' may be used uninitialized [-Wmaybe-uninitialized]
295 | logR = logLH_prop - logLH + logPrior1_prop - logPrior1 + logPrior2_prop - logPrior2 + logProp - logProp_new;
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSus_Updates.c:40:21: note: 'logProp_new' was declared here
40 | double logProp, logProp_new, logPrior2_1, logPrior2_1prop;
| ^~~~~~~~~~~
MBVSus_Updates.c:304:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
304 | gsl_matrix_set(updateNonzB, l, j, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSus_Updates.c:47:21: note: 'l' was declared here
47 | int u, i, j, k, l, m, ii, kk, lInx, count, count_rev, move, putInx;
| ^
MBVSus_Updates.c:314:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
314 | gsl_matrix_set(B, m, j, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
MBVSus_Updates.c:47:24: note: 'm' was declared here
47 | int u, i, j, k, l, m, ii, kk, lInx, count, count_rev, move, putInx;
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c MMZIP.c -o MMZIP.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c MMZIP_Updates.c -o MMZIP_Updates.o
MMZIP_Updates.c: In function 'updateRP_beta_mmzip_SSVS':
MMZIP_Updates.c:1621:15: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
1621 | if(move == 1) /* add move */
| ^
MMZIP_Updates.c:1533:41: note: 'move' was declared here
1533 | int u, i, jj, k, l, m, lInx, count, move;
| ^~~~
In file included from MMZIP_Updates.c:18:
/data/gannet/ripley/R/R-devel/include/Rmath.h:230:25: warning: 'beta_prop' may be used uninitialized [-Wmaybe-uninitialized]
230 | #define dnorm4 Rf_dnorm4
/data/gannet/ripley/R/R-devel/include/Rmath.h:348:15: note: in expansion of macro 'dnorm4'
348 | #define dnorm dnorm4
| ^~~~~~
MMZIP_Updates.c:1774:33: note: in expansion of macro 'dnorm'
1774 | logPrior_prop = dnorm(beta_prop, 0, sqrt(gsl_vector_get(sigSq_beta, l))*gsl_vector_get(v_beta, jj), 1);
| ^~~~~
MMZIP_Updates.c:1525:12: note: 'beta_prop' was declared here
1525 | double beta_prop;
| ^~~~~~~~~
MMZIP_Updates.c:1774:53: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
1774 | logPrior_prop = dnorm(beta_prop, 0, sqrt(gsl_vector_get(sigSq_beta, l))*gsl_vector_get(v_beta, jj), 1);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MMZIP_Updates.c:1533:22: note: 'l' was declared here
1533 | int u, i, jj, k, l, m, lInx, count, move;
| ^
MMZIP_Updates.c:1775:77: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
1775 | logPrior_prop += log(gsl_vector_get(omega_beta, l)) + log(1-gsl_vector_get(omega_beta, m));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
MMZIP_Updates.c:1533:25: note: 'm' was declared here
1533 | int u, i, jj, k, l, m, lInx, count, move;
| ^
MMZIP_Updates.c: In function 'updateRP_alpha_mmzip_SSVS':
MMZIP_Updates.c:1936:11: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
1936 | if(move == 1)
| ^
MMZIP_Updates.c:1868:45: note: 'move' was declared here
1868 | int u, i, jj, k, l, m, ll, lInx, count, move;
| ^~~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c Utilities.c -o Utilities.o
Utilities.c: In function 'c_multinom_sample':
Utilities.c:831:5: warning: '<unknown>' may be used uninitialized [-Wmaybe-uninitialized]
831 | gsl_ran_multinomial(rr, KK, 1, probK, samples);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from Utilities.c:13:
/usr/include/gsl/gsl_randist.h:154:6: note: by argument 4 of type 'const double[]' to 'gsl_ran_multinomial' declared here
154 | void gsl_ran_multinomial (const gsl_rng * r, const size_t K,
| ^~~~~~~~~~~~~~~~~~~
Utilities.c:838:12: warning: 'val' may be used uninitialized [-Wmaybe-uninitialized]
838 | return val;
| ^~~
Utilities.c:820:13: note: 'val' was declared here
820 | int ii, val;
| ^~~
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mzipBVS_general.c -o mzipBVS_general.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mzipBVS_general_Updates.c -o mzipBVS_general_Updates.o
mzipBVS_general_Updates.c: In function 'mzipBVS_general_updateRP_beta':
mzipBVS_general_Updates.c:110:11: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
110 | if(move == 1)
| ^
mzipBVS_general_Updates.c:48:68: note: 'move' was declared here
48 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^~~~
mzipBVS_general_Updates.c:296:17: warning: 'beta_prop' may be used uninitialized [-Wmaybe-uninitialized]
296 | gsl_matrix_set(updateNonzB, l, jj, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzipBVS_general_Updates.c:41:12: note: 'beta_prop' was declared here
41 | double beta_prop;
| ^~~~~~~~~
mzipBVS_general_Updates.c:296:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
296 | gsl_matrix_set(updateNonzB, l, jj, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzipBVS_general_Updates.c:48:25: note: 'l' was declared here
48 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzipBVS_general_Updates.c:306:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
306 | gsl_matrix_set(B, m, jj, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
mzipBVS_general_Updates.c:48:28: note: 'm' was declared here
48 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzipBVS_general_Updates.c: In function 'mzipBVS_general_updateRP_alpha':
mzipBVS_general_Updates.c:584:11: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
584 | if(move == 1)
| ^
mzipBVS_general_Updates.c:518:68: note: 'move' was declared here
518 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^~~~
mzipBVS_general_Updates.c:771:17: warning: 'alpha_prop' may be used uninitialized [-Wmaybe-uninitialized]
771 | gsl_matrix_set(updateNonzA, l, jj, alpha_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzipBVS_general_Updates.c:511:12: note: 'alpha_prop' was declared here
511 | double alpha_prop, res, res_prop;
| ^~~~~~~~~~
mzipBVS_general_Updates.c:771:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
771 | gsl_matrix_set(updateNonzA, l, jj, alpha_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzipBVS_general_Updates.c:518:25: note: 'l' was declared here
518 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzipBVS_general_Updates.c:781:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
781 | gsl_matrix_set(A, m, jj, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
mzipBVS_general_Updates.c:518:28: note: 'm' was declared here
518 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mzip_restricted1.c -o mzip_restricted1.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mzip_restricted1_Updates.c -o mzip_restricted1_Updates.o
mzip_restricted1_Updates.c: In function 'mzipBVS_restricted1_updateRP':
mzip_restricted1_Updates.c:123:11: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
123 | if(move == 1)
| ^
mzip_restricted1_Updates.c:54:68: note: 'move' was declared here
54 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^~~~
mzip_restricted1_Updates.c:370:17: warning: 'alpha_prop' may be used uninitialized [-Wmaybe-uninitialized]
370 | gsl_matrix_set(updateNonzA, l, jj, alpha_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted1_Updates.c:47:12: note: 'alpha_prop' was declared here
47 | double alpha_prop, beta_prop, res, res_prop;
| ^~~~~~~~~~
mzip_restricted1_Updates.c:369:17: warning: 'beta_prop' may be used uninitialized [-Wmaybe-uninitialized]
369 | gsl_matrix_set(updateNonzB, l, jj, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted1_Updates.c:47:24: note: 'beta_prop' was declared here
47 | double alpha_prop, beta_prop, res, res_prop;
| ^~~~~~~~~
mzip_restricted1_Updates.c:369:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
369 | gsl_matrix_set(updateNonzB, l, jj, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted1_Updates.c:54:25: note: 'l' was declared here
54 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzip_restricted1_Updates.c:381:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
381 | gsl_matrix_set(B, m, jj, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted1_Updates.c:54:28: note: 'm' was declared here
54 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mzip_restricted2.c -o mzip_restricted2.o
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c mzip_restricted2_Updates.c -o mzip_restricted2_Updates.o
mzip_restricted2_Updates.c: In function 'mzip_restricted2_updateRP_beta':
mzip_restricted2_Updates.c:106:11: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
106 | if(move == 1)
| ^
mzip_restricted2_Updates.c:44:68: note: 'move' was declared here
44 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^~~~
mzip_restricted2_Updates.c:292:17: warning: 'beta_prop' may be used uninitialized [-Wmaybe-uninitialized]
292 | gsl_matrix_set(updateNonzB, l, jj, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted2_Updates.c:37:12: note: 'beta_prop' was declared here
37 | double beta_prop;
| ^~~~~~~~~
mzip_restricted2_Updates.c:292:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
292 | gsl_matrix_set(updateNonzB, l, jj, beta_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted2_Updates.c:44:25: note: 'l' was declared here
44 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzip_restricted2_Updates.c:302:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
302 | gsl_matrix_set(B, m, jj, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted2_Updates.c:44:28: note: 'm' was declared here
44 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzip_restricted2_Updates.c: In function 'mzip_restricted2_updateRP_alpha':
mzip_restricted2_Updates.c:579:11: warning: 'move' may be used uninitialized [-Wmaybe-uninitialized]
579 | if(move == 1)
| ^
mzip_restricted2_Updates.c:513:68: note: 'move' was declared here
513 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^~~~
mzip_restricted2_Updates.c:763:17: warning: 'alpha_prop' may be used uninitialized [-Wmaybe-uninitialized]
763 | gsl_matrix_set(updateNonzA, l, jj, alpha_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted2_Updates.c:506:12: note: 'alpha_prop' was declared here
506 | double alpha_prop, res, res_prop;
| ^~~~~~~~~~
mzip_restricted2_Updates.c:763:17: warning: 'l' may be used uninitialized [-Wmaybe-uninitialized]
763 | gsl_matrix_set(updateNonzA, l, jj, alpha_prop);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted2_Updates.c:513:25: note: 'l' was declared here
513 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
mzip_restricted2_Updates.c:773:17: warning: 'm' may be used uninitialized [-Wmaybe-uninitialized]
773 | gsl_matrix_set(A, m, jj, 0);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
mzip_restricted2_Updates.c:513:28: note: 'm' was declared here
513 | int u, i, j, jj, k, l, m, ii, kk, kkk, lInx, count, count_rev, move, putInx;
| ^
gcc-13 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c registerDynamicSymbol.c -o registerDynamicSymbol.o
gcc-13 -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o mBvs.so MBVSfa.o MBVSfa_Updates.o MBVSus.o MBVSus_Updates.o MMZIP.o MMZIP_Updates.o Utilities.o mzipBVS_general.o mzipBVS_general_Updates.o mzip_restricted1.o mzip_restricted1_Updates.o mzip_restricted2.o mzip_restricted2_Updates.o registerDynamicSymbol.o -L/usr/local/lib -lgsl -lgslcblas -lm
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mBvs/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/mBvs/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/mBvs/src'
installing to /data/gannet/ripley/R/packages/tests-devel/mBvs.Rcheck/00LOCK-mBvs/00new/mBvs/libs
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (mBvs)