* installing *source* package ‘lsirm12pl’ ...
** this is package ‘lsirm12pl’ version ‘2.0.0’
** package ‘lsirm12pl’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/lsirm12pl/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c lsirm1pl.cpp -o lsirm1pl.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c lsirm2pl.cpp -o lsirm2pl.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c lsirm_grm.cpp -o lsirm_grm.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c lsm.cpp -o lsm.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utility_cpp.cpp -o utility_cpp.o
utility_cpp.cpp: In function ‘Rcpp::List log_likelihood_grm_cpp(arma::mat, int, int, arma::mat, arma::mat, double, arma::mat, arma::mat, double)’:
utility_cpp.cpp:145:22: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘const int’ [-Wsign-compare]
  145 |   if(beta_est.n_rows != nitem || beta_est.n_cols != Kminus1){
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
utility_cpp.cpp:145:50: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘const int’ [-Wsign-compare]
  145 |   if(beta_est.n_rows != nitem || beta_est.n_cols != Kminus1){
      |                                  ~~~~~~~~~~~~~~~~^~~~~~~~~~
utility_cpp.cpp: In function ‘Rcpp::List log_likelihood_grm2pl_cpp(arma::mat, int, int, arma::mat, arma::mat, arma::mat, double, arma::mat, arma::mat, double)’:
utility_cpp.cpp:197:22: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘const int’ [-Wsign-compare]
  197 |   if(beta_est.n_rows != nitem || beta_est.n_cols != Kminus1){
      |      ~~~~~~~~~~~~~~~~^~~~~~~~
utility_cpp.cpp:197:50: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘const int’ [-Wsign-compare]
  197 |   if(beta_est.n_rows != nitem || beta_est.n_cols != Kminus1){
      |                                  ~~~~~~~~~~~~~~~~^~~~~~~~~~
utility_cpp.cpp:200:23: warning: comparison of integer expressions of different signedness: ‘const arma::uword’ {aka ‘const unsigned int’} and ‘const int’ [-Wsign-compare]
  200 |   if(alpha_est.n_rows != nitem){
      |      ~~~~~~~~~~~~~~~~~^~~~~~~~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o lsirm12pl.so RcppExports.o lsirm1pl.o lsirm2pl.o lsirm_grm.o lsm.o utility_cpp.o -fopenmp -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/lsirm12pl/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/lsirm12pl/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/lsirm12pl/src'
installing to /data/gannet/ripley/R/packages/tests-devel/lsirm12pl.Rcheck/00LOCK-lsirm12pl/00new/lsirm12pl/libs
** R
** data
*** moving datasets to lazyload DB
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lsirm12pl)