* installing *source* package ‘lidR’ ...
** this is package ‘lidR’ version ‘4.3.1’
** package ‘lidR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
specified C++17
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using C++17
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/lidR/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Progress.cpp -o Progress.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c ptd/PTD.cpp -o ptd/PTD.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c UnitTests.cpp -o UnitTests.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c C_delaunay.cpp -o C_delaunay.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c C_ptd.cpp -o C_ptd.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c C_chm_prep.cpp -o C_chm_prep.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c LAS.cpp -o LAS.o
LAS.cpp: In member function ‘void LAS::filter_local_maxima(Rcpp::NumericVector, double, bool)’:
LAS.cpp:413:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
413 | for (int i = 0 ; i < npoints ; i++) { if (Z[i] < min_height) state[i] = NLM; }
| ~~^~~~~~~~~
LAS.cpp:401:8: warning: unused variable ‘UKN’ [-Wunused-variable]
401 | char UKN = 0;
| ^~~
LAS.cpp:403:8: warning: unused variable ‘LMX’ [-Wunused-variable]
403 | char LMX = 2;
| ^~~
LAS.cpp: In member function ‘void LAS::filter_local_maxima(Rcpp::NumericVector)’:
LAS.cpp:489:10: warning: variable ‘orientation’ set but not used [-Wunused-but-set-variable]
489 | double orientation = 0;
| ^~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c LAS_point_metrics.cpp -o LAS_point_metrics.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c knn.cpp -o knn.o
knn.cpp: In function ‘Rcpp::List cpp_knn(Rcpp::S4, int, int)’:
knn.cpp:59:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
59 | for (unsigned int i = 0; i < npoints; i++)
| ~~^~~~~~~~~
knn.cpp:70:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int, std::allocator<unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
70 | for (auto j = 1; j < indices.size(); j++)
| ~~^~~~~~~~~~~~~~~~
knn.cpp: In function ‘Rcpp::List cpp_knnx(Rcpp::S4, Rcpp::S4, int, int)’:
knn.cpp:107:31: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
107 | for (unsigned int i = 0 ; i < npoints ; i++)
| ~~^~~~~~~~~
knn.cpp:118:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<unsigned int, std::allocator<unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
118 | for (auto j = 0; j < indices.size(); j++)
| ~~^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c C_Gatziolis2019.cpp -o C_Gatziolis2019.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppFunction.cpp -o RcppFunction.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c spikefree/Spikefree.cpp -o spikefree/Spikefree.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c openmputils.cpp -o openmputils.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c convaveman.cpp -o convaveman.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c altrep.cpp -o altrep.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hporro/pred3d.cpp -o hporro/pred3d.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hporro/delaunay.cpp -o hporro/delaunay.o
In file included from hporro/delaunay.cpp:2:
hporro/pred3d.h:260:13: warning: ‘ispstaticfilter’ defined but not used [-Wunused-variable]
260 | static REAL ispstaticfilter;
| ^~~~~~~~~~~~~~~
hporro/pred3d.h:259:13: warning: ‘o3dstaticfilter’ defined but not used [-Wunused-variable]
259 | static REAL o3dstaticfilter;
| ^~~~~~~~~~~~~~~
hporro/pred3d.h:254:13: warning: ‘_use_static_isp_filter’ defined but not used [-Wunused-variable]
254 | static int _use_static_isp_filter;
| ^~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.h:253:13: warning: ‘_use_static_o3d_filter’ defined but not used [-Wunused-variable]
253 | static int _use_static_o3d_filter;
| ^~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.h:252:13: warning: ‘_use_inexact_arith’ defined but not used [-Wunused-variable]
252 | static int _use_inexact_arith; // -X option.
| ^~~~~~~~~~~~~~~~~~
hporro/pred3d.h:248:41: warning: ‘isperrboundC’ defined but not used [-Wunused-variable]
248 | static REAL isperrboundA, isperrboundB, isperrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:248:27: warning: ‘isperrboundB’ defined but not used [-Wunused-variable]
248 | static REAL isperrboundA, isperrboundB, isperrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:248:13: warning: ‘isperrboundA’ defined but not used [-Wunused-variable]
248 | static REAL isperrboundA, isperrboundB, isperrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:247:41: warning: ‘iccerrboundC’ defined but not used [-Wunused-variable]
247 | static REAL iccerrboundA, iccerrboundB, iccerrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:247:27: warning: ‘iccerrboundB’ defined but not used [-Wunused-variable]
247 | static REAL iccerrboundA, iccerrboundB, iccerrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:247:13: warning: ‘iccerrboundA’ defined but not used [-Wunused-variable]
247 | static REAL iccerrboundA, iccerrboundB, iccerrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:246:41: warning: ‘o3derrboundC’ defined but not used [-Wunused-variable]
246 | static REAL o3derrboundA, o3derrboundB, o3derrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:246:27: warning: ‘o3derrboundB’ defined but not used [-Wunused-variable]
246 | static REAL o3derrboundA, o3derrboundB, o3derrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:246:13: warning: ‘o3derrboundA’ defined but not used [-Wunused-variable]
246 | static REAL o3derrboundA, o3derrboundB, o3derrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:245:41: warning: ‘ccwerrboundC’ defined but not used [-Wunused-variable]
245 | static REAL ccwerrboundA, ccwerrboundB, ccwerrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:245:27: warning: ‘ccwerrboundB’ defined but not used [-Wunused-variable]
245 | static REAL ccwerrboundA, ccwerrboundB, ccwerrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:245:13: warning: ‘ccwerrboundA’ defined but not used [-Wunused-variable]
245 | static REAL ccwerrboundA, ccwerrboundB, ccwerrboundC;
| ^~~~~~~~~~~~
hporro/pred3d.h:244:13: warning: ‘resulterrbound’ defined but not used [-Wunused-variable]
244 | static REAL resulterrbound;
| ^~~~~~~~~~~~~~
hporro/pred3d.h:242:13: warning: ‘epsilon’ defined but not used [-Wunused-variable]
242 | static REAL epsilon; /* = 2^(-p). Used to estimate roundoff errors. */
| ^~~~~~~
hporro/pred3d.h:241:13: warning: ‘splitter’ defined but not used [-Wunused-variable]
241 | static REAL splitter;
| ^~~~~~~~
hporro/pred3d.cpp: In function ‘double incircleadapt(const double*, const double*, const double*, const double*, double)’:
hporro/pred3d.cpp:3803:44: warning: ‘axtbclen’ may be used uninitialized [-Wmaybe-uninitialized]
3803 | temp16alen = scale_expansion_zeroelim(axtbclen, axtbc, adxtail, temp16a);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.cpp:3542:7: note: ‘axtbclen’ was declared here
3542 | int axtbclen, aytbclen, bxtcalen, bytcalen, cxtablen, cytablen;
| ^~~~~~~~
hporro/pred3d.cpp:3845:44: warning: ‘aytbclen’ may be used uninitialized [-Wmaybe-uninitialized]
3845 | temp16alen = scale_expansion_zeroelim(aytbclen, aytbc, adytail, temp16a);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.cpp:3542:17: note: ‘aytbclen’ was declared here
3542 | int axtbclen, aytbclen, bxtcalen, bytcalen, cxtablen, cytablen;
| ^~~~~~~~
hporro/pred3d.cpp:3942:44: warning: ‘bytcalen’ may be used uninitialized [-Wmaybe-uninitialized]
3942 | temp16alen = scale_expansion_zeroelim(bytcalen, bytca, bdytail, temp16a);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.cpp:3542:37: note: ‘bytcalen’ was declared here
3542 | int axtbclen, aytbclen, bxtcalen, bytcalen, cxtablen, cytablen;
| ^~~~~~~~
hporro/pred3d.cpp:3900:44: warning: ‘bxtcalen’ may be used uninitialized [-Wmaybe-uninitialized]
3900 | temp16alen = scale_expansion_zeroelim(bxtcalen, bxtca, bdxtail, temp16a);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.cpp:3542:27: note: ‘bxtcalen’ was declared here
3542 | int axtbclen, aytbclen, bxtcalen, bytcalen, cxtablen, cytablen;
| ^~~~~~~~
hporro/pred3d.cpp:4039:44: warning: ‘cytablen’ may be used uninitialized [-Wmaybe-uninitialized]
4039 | temp16alen = scale_expansion_zeroelim(cytablen, cytab, cdytail, temp16a);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.cpp:3542:57: note: ‘cytablen’ was declared here
3542 | int axtbclen, aytbclen, bxtcalen, bytcalen, cxtablen, cytablen;
| ^~~~~~~~
hporro/pred3d.cpp:3997:44: warning: ‘cxtablen’ may be used uninitialized [-Wmaybe-uninitialized]
3997 | temp16alen = scale_expansion_zeroelim(cxtablen, cxtab, cdxtail, temp16a);
| ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hporro/pred3d.cpp:3542:47: note: ‘cxtablen’ was declared here
3542 | int axtbclen, aytbclen, bxtcalen, bytcalen, cxtablen, cytablen;
| ^~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c hporro/index.cpp -o hporro/index.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c C_dalponte2016.cpp -o C_dalponte2016.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/BH/include' -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c C_spikefree.cpp -o C_spikefree.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o lidR.so ./Progress.o ./ptd/PTD.o ./RcppExports.o ./UnitTests.o ./C_delaunay.o ./C_ptd.o ./C_chm_prep.o ./LAS.o ./LAS_point_metrics.o ./knn.o ./C_Gatziolis2019.o ./RcppFunction.o ./spikefree/Spikefree.o ./openmputils.o ./convaveman.o ./altrep.o ./hporro/pred3d.o ./hporro/delaunay.o ./hporro/index.o ./C_dalponte2016.o ./C_spikefree.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -fopenmp
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/lidR/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/lidR/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/lidR/src'
installing to /data/gannet/ripley/R/packages/tests-devel/lidR.Rcheck/00LOCK-lidR/00new/lidR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lidR)