* installing *source* package ‘libdeflate’ ...
** this is package ‘libdeflate’ version ‘1.24-2’
** package ‘libdeflate’ successfully unpacked and MD5 sums checked
** using staged installation
** preparing to configure package 'libdeflate' ...
*** configure: system libdeflate exists, using that for building the library
*** configure: using include path ''
*** configure.R: Found installed version of libdeflate with correct version at '-ldeflate', will link in that version to the package.
loading initial cache file ../build/initial-cache.cmake
-- The C compiler identification is GNU 15.1.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/gcc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test HAVE_WDECLARATION_AFTER_STATEMENT
-- Performing Test HAVE_WDECLARATION_AFTER_STATEMENT - Success
-- Performing Test HAVE_WIMPLICIT_FALLTHROUGH
-- Performing Test HAVE_WIMPLICIT_FALLTHROUGH - Success
-- Performing Test HAVE_WMISSING_FIELD_INITIALIZERS
-- Performing Test HAVE_WMISSING_FIELD_INITIALIZERS - Success
-- Performing Test HAVE_WMISSING_PROTOTYPES
-- Performing Test HAVE_WMISSING_PROTOTYPES - Success
-- Performing Test HAVE_WPEDANTIC
-- Performing Test HAVE_WPEDANTIC - Success
-- Performing Test HAVE_WSHADOW
-- Performing Test HAVE_WSHADOW - Success
-- Performing Test HAVE_WSTRICT_PROTOTYPES
-- Performing Test HAVE_WSTRICT_PROTOTYPES - Success
-- Performing Test HAVE_WUNDEF
-- Performing Test HAVE_WUNDEF - Success
-- Performing Test HAVE_WVLA
-- Performing Test HAVE_WVLA - Success
-- Configuring done (1.5s)
-- Generating done (0.0s)
-- Build files have been written to: /data/gannet/ripley/R/packages/tests-devel/libdeflate/src/libdeflate/build
*** configured file: 'src/Makevars.in' => 'src/Makevars'
*** configured file: 'src/Makevars.in' => 'src/Makevars'
*** configured file: 'src/Makevars.win.in' => 'src/Makevars.win'
** finished configure for package 'libdeflate'
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/libdeflate/src'
==> Building bundled libdeflate for downstream packages that build and link bundled static libraries that use CMake
cd /data/gannet/ripley/R/packages/tests-devel/libdeflate/src/libdeflate/build && \
/usr/bin/cmake --build . --config Release && \
/usr/bin/cmake --install . --config Release && \
cd /data/gannet/ripley/R/packages/tests-devel/libdeflate && \
"/data/gannet/ripley/R/R-devel/bin/Rscript" tools/fix-line-endings.R src/Makevars \
	src/libdeflate/build/Makefile && \
"/data/gannet/ripley/R/R-devel/bin/Rscript" tools/fix-targets.R \
inst/lib/x86_64/cmake/libdeflate/libdeflate-targets.cmake
gmake[2]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/libdeflate/src/libdeflate/build'
[  8%] Building C object CMakeFiles/libdeflate_static.dir/lib/utils.c.o
[ 25%] Building C object CMakeFiles/libdeflate_static.dir/lib/deflate_compress.c.o
[ 25%] Building C object CMakeFiles/libdeflate_static.dir/lib/arm/cpu_features.c.o
[ 33%] Building C object CMakeFiles/libdeflate_static.dir/lib/crc32.c.o
[ 50%] Building C object CMakeFiles/libdeflate_static.dir/lib/deflate_decompress.c.o
[ 50%] Building C object CMakeFiles/libdeflate_static.dir/lib/x86/cpu_features.c.o
[ 58%] Building C object CMakeFiles/libdeflate_static.dir/lib/adler32.c.o
[ 66%] Building C object CMakeFiles/libdeflate_static.dir/lib/zlib_compress.c.o
[ 75%] Building C object CMakeFiles/libdeflate_static.dir/lib/gzip_decompress.c.o
[ 83%] Building C object CMakeFiles/libdeflate_static.dir/lib/zlib_decompress.c.o
[ 91%] Building C object CMakeFiles/libdeflate_static.dir/lib/gzip_compress.c.o
[100%] Linking C static library libdeflate.a
[100%] Built target libdeflate_static
gmake[2]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/libdeflate/src/libdeflate/build'
-- Installing: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/lib/x86_64/libdeflate.a
-- Up-to-date: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/include/libdeflate.h
-- Installing: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/lib/x86_64/pkgconfig/libdeflate.pc
-- Installing: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-targets.cmake
-- Installing: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-targets-release.cmake
-- Installing: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-config.cmake
-- Installing: /data/gannet/ripley/R/packages/tests-devel/libdeflate/inst/lib/x86_64/cmake/libdeflate/libdeflate-config-version.cmake
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I  -I/usr/local/include   -I -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c r-api.c -o r-api.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o libdeflate.so r-api.o -L-ldeflate
/usr/bin/ld: r-api.o: relocation R_X86_64_32 against `.text' can not be used when making a shared object; recompile with -fPIC
/usr/bin/ld: failed to set dynamic section sizes: bad value
collect2: error: ld returned 1 exit status
make[1]: *** [/data/gannet/ripley/R/R-devel/share/make/shlib.mk:10: libdeflate.so] Error 1
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/libdeflate/src'
ERROR: compilation failed for package ‘libdeflate’
* removing ‘/data/gannet/ripley/R/packages/tests-devel/libdeflate.Rcheck/libdeflate’