* installing *source* package ‘libcmaesr’ ... ** this is package ‘libcmaesr’ version ‘0.1.0’ ** package ‘libcmaesr’ successfully unpacked and MD5 sums checked ** using staged installation ** libs using C compiler: ‘gcc (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ using C++ compiler: ‘g++ (GCC) 16.2.1 20260819 (Red Hat 16.2.1-2)’ make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src' g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cmaes_wrap.cpp -o cmaes_wrap.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/esoptimizer.h:27, from libcmaes/include/libcmaes/cmaes.h:25, from cmaes_wrap.cpp:2: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rc_helpers.c -o rc_helpers.o g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/acovarianceupdate.cc -o libcmaes/acovarianceupdate.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/acovarianceupdate.h:25, from libcmaes/acovarianceupdate.cc:22: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337, from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1, from libcmaes/include/libcmaes/eo_matrix.h:26, from libcmaes/include/libcmaes/parameters.h:25: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >]’: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 227 | internal::selfadjoint_matrix_vector_product::Flags&RowMajorBit) ? RowMajor : ColMajor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | ( | ^ 230 | lhs.rows(), // size | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | actualRhsPtr, // rhs info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | actualDestPtr, // result info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | actualAlpha // scale factor | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | ); | ~ /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here 41 | void selfadjoint_matrix_vector_product::run( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/bipopcmastrategy.cc -o libcmaes/bipopcmastrategy.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/candidate.h:26, from libcmaes/include/libcmaes/esostrategy.h:26, from libcmaes/include/libcmaes/cmastrategy.h:25, from libcmaes/include/libcmaes/ipopcmastrategy.h:25, from libcmaes/include/libcmaes/bipopcmastrategy.h:25, from libcmaes/bipopcmastrategy.cc:22: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmaparameters.cc -o libcmaes/cmaparameters.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/cmaparameters.cc:24: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmasolutions.cc -o libcmaes/cmasolutions.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/candidate.h:26, from libcmaes/include/libcmaes/cmasolutions.h:26, from libcmaes/cmasolutions.cc:22: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmastopcriteria.cc -o libcmaes/cmastopcriteria.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/cmastopcriteria.h:25, from libcmaes/cmastopcriteria.cc:23: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmastrategy.cc -o libcmaes/cmastrategy.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/candidate.h:26, from libcmaes/include/libcmaes/esostrategy.h:26, from libcmaes/include/libcmaes/cmastrategy.h:25, from libcmaes/cmastrategy.cc:24: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/covarianceupdate.cc -o libcmaes/covarianceupdate.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/covarianceupdate.h:25, from libcmaes/covarianceupdate.cc:22: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/errstats.cc -o libcmaes/errstats.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/esoptimizer.h:27, from libcmaes/include/libcmaes/cmaes.h:25, from libcmaes/include/libcmaes/errstats.h:27, from libcmaes/errstats.cc:22: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/esostrategy.cc -o libcmaes/esostrategy.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/candidate.h:26, from libcmaes/include/libcmaes/esostrategy.h:26, from libcmaes/esostrategy.cc:23: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/esostrategy.cc:92: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 92 | #pragma omp parallel for if (_parameters._mt_feval) libcmaes/esostrategy.cc:175: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 175 | #pragma omp parallel for if (_parameters._mt_feval) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/ipopcmastrategy.cc -o libcmaes/ipopcmastrategy.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/candidate.h:26, from libcmaes/include/libcmaes/esostrategy.h:26, from libcmaes/include/libcmaes/cmastrategy.h:25, from libcmaes/include/libcmaes/ipopcmastrategy.h:25, from libcmaes/ipopcmastrategy.cc:22: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/pwq_bound_strategy.cc -o libcmaes/pwq_bound_strategy.o g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/vdcmaupdate.cc -o libcmaes/vdcmaupdate.o In file included from libcmaes/include/libcmaes/parameters.h:26, from libcmaes/include/libcmaes/cmaparameters.h:25, from libcmaes/include/libcmaes/vdcmaupdate.h:25, from libcmaes/vdcmaupdate.cc:28: libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 103 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 120 | #pragma omp parallel for if (candidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 139 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 150 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 167 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 177 | #pragma omp parallel for if (ncandidates.cols() >= 100) libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas] 326 | #pragma omp parallel for if (ncandidates.cols() >= 100) In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337, from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1, from libcmaes/include/libcmaes/eo_matrix.h:26, from libcmaes/include/libcmaes/esostrategy.h:25: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block, -1, 1, false>; Lhs = Eigen::Block, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Block, -1, 1, true>, -1, 1, false> >]’: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 227 | internal::selfadjoint_matrix_vector_product::Flags&RowMajorBit) ? RowMajor : ColMajor, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 | ( | ^ 230 | lhs.rows(), // size | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 232 | actualRhsPtr, // rhs info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 | actualDestPtr, // result info | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 | actualAlpha // scale factor | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 | ); | ~ /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here 41 | void selfadjoint_matrix_vector_product::run( | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose, const Eigen::CwiseNullaryOp, const Eigen::Matrix >, const Eigen::Transpose, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose, 1, -1, true>, 1, -1, false> >; int Mode = 6]’: /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized] 327 | internal::triangular_matrix_vector_product | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 | | ~~~~~~~~~ 332 | ::run(actualLhs.rows(),actualLhs.cols(), | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 | actualLhs.data(),actualLhs.outerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 | actualRhsPtr,1, | ~~~~~~~~~~~~~~~ 335 | dest.data(),dest.innerStride(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 | actualAlpha); | ~~~~~~~~~~~~ /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here 105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++20 -shared -L/usr/local/lib64 -o libcmaesr.so cmaes_wrap.o init.o rc_helpers.o libcmaes/acovarianceupdate.o libcmaes/bipopcmastrategy.o libcmaes/cmaparameters.o libcmaes/cmasolutions.o libcmaes/cmastopcriteria.o libcmaes/cmastrategy.o libcmaes/covarianceupdate.o libcmaes/errstats.o libcmaes/esostrategy.o libcmaes/ipopcmastrategy.o libcmaes/pwq_bound_strategy.o libcmaes/vdcmaupdate.o make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src' make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src' make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src' installing to /data/localhost/ripley/R/packages/tests-devel/libcmaesr.Rcheck/00LOCK-libcmaesr/00new/libcmaesr/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (libcmaesr)