* installing *source* package ‘libcmaesr’ ...
** this is package ‘libcmaesr’ version ‘0.1.0’
** package ‘libcmaesr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cmaes_wrap.cpp -o cmaes_wrap.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/esoptimizer.h:27,
from libcmaes/include/libcmaes/cmaes.h:25,
from cmaes_wrap.cpp:2:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c init.c -o init.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c rc_helpers.c -o rc_helpers.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/acovarianceupdate.cc -o libcmaes/acovarianceupdate.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/acovarianceupdate.h:25,
from libcmaes/acovarianceupdate.cc:22:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/bipopcmastrategy.cc -o libcmaes/bipopcmastrategy.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/candidate.h:26,
from libcmaes/include/libcmaes/esostrategy.h:26,
from libcmaes/include/libcmaes/cmastrategy.h:25,
from libcmaes/include/libcmaes/ipopcmastrategy.h:25,
from libcmaes/include/libcmaes/bipopcmastrategy.h:25,
from libcmaes/bipopcmastrategy.cc:22:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmaparameters.cc -o libcmaes/cmaparameters.o
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from libcmaes/include/libcmaes/eo_matrix.h:26,
from libcmaes/include/libcmaes/parameters.h:25:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/cmaparameters.cc:24:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmasolutions.cc -o libcmaes/cmasolutions.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/candidate.h:26,
from libcmaes/include/libcmaes/cmasolutions.h:26,
from libcmaes/cmasolutions.cc:22:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmastopcriteria.cc -o libcmaes/cmastopcriteria.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/cmastopcriteria.h:25,
from libcmaes/cmastopcriteria.cc:23:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/cmastrategy.cc -o libcmaes/cmastrategy.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/candidate.h:26,
from libcmaes/include/libcmaes/esostrategy.h:26,
from libcmaes/include/libcmaes/cmastrategy.h:25,
from libcmaes/cmastrategy.cc:24:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/covarianceupdate.cc -o libcmaes/covarianceupdate.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/covarianceupdate.h:25,
from libcmaes/covarianceupdate.cc:22:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/errstats.cc -o libcmaes/errstats.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/esoptimizer.h:27,
from libcmaes/include/libcmaes/cmaes.h:25,
from libcmaes/include/libcmaes/errstats.h:27,
from libcmaes/errstats.cc:22:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/esostrategy.cc -o libcmaes/esostrategy.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/candidate.h:26,
from libcmaes/include/libcmaes/esostrategy.h:26,
from libcmaes/esostrategy.cc:23:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/esostrategy.cc:92: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
92 | #pragma omp parallel for if (_parameters._mt_feval)
libcmaes/esostrategy.cc:175: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
175 | #pragma omp parallel for if (_parameters._mt_feval)
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:337,
from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Dense:1,
from libcmaes/include/libcmaes/eo_matrix.h:26,
from libcmaes/include/libcmaes/esostrategy.h:25:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h: In function ‘static void Eigen::internal::selfadjoint_product_impl<Lhs, LhsMode, false, Rhs, 0, true>::run(Dest&, const Lhs&, const Rhs&, const Scalar&) [with Dest = Eigen::Block<Eigen::Matrix<double, -1, 1>, -1, 1, false>; Lhs = Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>; int LhsMode = 17; Rhs = Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, -1, 1> >, const Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, 1, true>, -1, 1, false> >]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:229:7: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
227 | internal::selfadjoint_matrix_vector_product<Scalar, Index, (internal::traits<ActualLhsTypeCleaned>::Flags&RowMajorBit) ? RowMajor : ColMajor,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
228 | int(LhsUpLo), bool(LhsBlasTraits::NeedToConjugate), bool(RhsBlasTraits::NeedToConjugate)>::run
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
229 | (
| ^
230 | lhs.rows(), // size
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
231 | &lhs.coeffRef(0,0), lhs.outerStride(), // lhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
232 | actualRhsPtr, // rhs info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
233 | actualDestPtr, // result info
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
234 | actualAlpha // scale factor
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
235 | );
| ~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/SelfadjointMatrixVector.h:41:6: note: by argument 4 of type ‘const double*’ to ‘static void Eigen::internal::selfadjoint_matrix_vector_product<Scalar, Index, StorageOrder, UpLo, ConjugateLhs, ConjugateRhs, Version>::run(Index, const Scalar*, Index, const Scalar*, Scalar*, Scalar) [with Scalar = double; Index = long int; int StorageOrder = 0; int UpLo = 1; bool ConjugateLhs = false; bool ConjugateRhs = false; int Version = 0]’ declared here
41 | void selfadjoint_matrix_vector_product<Scalar,Index,StorageOrder,UpLo,ConjugateLhs,ConjugateRhs,Version>::run(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/Core:341:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h: In function ‘static void Eigen::internal::trmv_selector<Mode, 1>::run(const Lhs&, const Rhs&, Dest&, const typename Dest::Scalar&) [with Lhs = Eigen::Transpose<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, -1, false> >; Rhs = Eigen::Transpose<const Eigen::CwiseBinaryOp<Eigen::internal::scalar_product_op<double, double>, const Eigen::CwiseNullaryOp<Eigen::internal::scalar_constant_op<double>, const Eigen::Matrix<double, 1, -1> >, const Eigen::Transpose<const Eigen::Block<const Eigen::Block<const Eigen::Block<Eigen::Matrix<double, -1, -1>, -1, -1, false>, -1, 1, true>, -1, 1, false> > > >; Dest = Eigen::Transpose<Eigen::Block<Eigen::Block<Eigen::Matrix<double, -1, -1, 1, -1, -1>, 1, -1, true>, 1, -1, false> >; int Mode = 6]’:
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:332:12: warning: ‘result’ may be used uninitialized [-Wmaybe-uninitialized]
327 | internal::triangular_matrix_vector_product
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
328 | <Index,Mode,
| ~~~~~~~~~~~~
329 | LhsScalar, LhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
330 | RhsScalar, RhsBlasTraits::NeedToConjugate,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
331 | RowMajor>
| ~~~~~~~~~
332 | ::run(actualLhs.rows(),actualLhs.cols(),
| ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
333 | actualLhs.data(),actualLhs.outerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
334 | actualRhsPtr,1,
| ~~~~~~~~~~~~~~~
335 | dest.data(),dest.innerStride(),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
336 | actualAlpha);
| ~~~~~~~~~~~~
/data/localhost/ripley/R/test-dev/RcppEigen/include/Eigen/src/Core/products/TriangularMatrixVector.h:105:24: note: by argument 5 of type ‘const double*’ to ‘static void Eigen::internal::triangular_matrix_vector_product<Index, Mode, LhsScalar, ConjLhs, RhsScalar, ConjRhs, 1, Version>::run(Index, Index, const LhsScalar*, Index, const RhsScalar*, Index, ResScalar*, Index, const ResScalar&) [with Index = long int; int Mode = 6; LhsScalar = double; bool ConjLhs = false; RhsScalar = double; bool ConjRhs = false; int Version = 0]’ declared here
105 | EIGEN_DONT_INLINE void triangular_matrix_vector_product<Index,Mode,LhsScalar,ConjLhs,RhsScalar,ConjRhs,RowMajor,Version>
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/ipopcmastrategy.cc -o libcmaes/ipopcmastrategy.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/candidate.h:26,
from libcmaes/include/libcmaes/esostrategy.h:26,
from libcmaes/include/libcmaes/cmastrategy.h:25,
from libcmaes/include/libcmaes/ipopcmastrategy.h:25,
from libcmaes/ipopcmastrategy.cc:22:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/pwq_bound_strategy.cc -o libcmaes/pwq_bound_strategy.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG -Ilibcmaes/include -DLIBCMAES_LOG_TO_R=1 -I'/data/localhost/ripley/R/test-dev/RcppEigen/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c libcmaes/vdcmaupdate.cc -o libcmaes/vdcmaupdate.o
In file included from libcmaes/include/libcmaes/parameters.h:26,
from libcmaes/include/libcmaes/cmaparameters.h:25,
from libcmaes/include/libcmaes/vdcmaupdate.h:25,
from libcmaes/vdcmaupdate.cc:28:
libcmaes/include/libcmaes/genopheno.h:103: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
103 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:120: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
120 | #pragma omp parallel for if (candidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:139: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
139 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:150: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
150 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:167: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
167 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:177: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
177 | #pragma omp parallel for if (ncandidates.cols() >= 100)
libcmaes/include/libcmaes/genopheno.h:326: warning: ignoring ‘#pragma omp parallel’ [-Wunknown-pragmas]
326 | #pragma omp parallel for if (ncandidates.cols() >= 100)
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o libcmaesr.so cmaes_wrap.o init.o rc_helpers.o libcmaes/acovarianceupdate.o libcmaes/bipopcmastrategy.o libcmaes/cmaparameters.o libcmaes/cmasolutions.o libcmaes/cmastopcriteria.o libcmaes/cmastrategy.o libcmaes/covarianceupdate.o libcmaes/errstats.o libcmaes/esostrategy.o libcmaes/ipopcmastrategy.o libcmaes/pwq_bound_strategy.o libcmaes/vdcmaupdate.o
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/libcmaesr/src'
installing to /data/localhost/ripley/R/packages/tests-devel/libcmaesr.Rcheck/00LOCK-libcmaesr/00new/libcmaesr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (libcmaesr)