Install log for 'lame'

* installing *source* package ‘lame’ ...
** this is package ‘lame’ version ‘1.3.4’
** package ‘lame’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/lame/src'
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c Xbeta_cpp.cpp -o Xbeta_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dynamic_additive_effects.cpp -o dynamic_additive_effects.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dynamic_beta.cpp -o dynamic_beta.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dynamic_latent_factors.cpp -o dynamic_latent_factors.o
dynamic_beta.cpp: In function ‘void accumulate_Omega_h(const arma::mat&, const arma::mat&, const arma::mat&, const arma::mat&, const arma::vec&, double, double, bool, bool, bool, arma::mat&, arma::vec&)’:
dynamic_beta.cpp:119:19: warning: unused variable ‘n_obs’ [-Wunused-variable]
  119 |         const int n_obs = Xdyn_t.n_rows;
      |                   ^~~~~
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dynamic_latent_factors_bip.cpp -o dynamic_latent_factors_bip.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c four_cycles.cpp -o four_cycles.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c get_EZ_bip.cpp -o get_EZ_bip.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c get_EZ_cpp.cpp -o get_EZ_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c poisson_functions.cpp -o poisson_functions.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rUV_rep_fc_cpp.cpp -o rUV_rep_fc_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rUV_sym_fc_cpp.cpp -o rUV_sym_fc_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rZ_batch_fc_cpp.cpp -o rZ_batch_fc_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rZ_bin_fused.cpp -o rZ_bin_fused.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rbeta_ab_bip_fc_cpp.cpp -o rbeta_ab_bip_fc_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rbeta_ab_rep_fc_cpp.cpp -o rbeta_ab_rep_fc_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rbeta_debug.cpp -o rbeta_debug.o
rbeta_ab_rep_fc_cpp.cpp: In function ‘arma::vec rmvnorm_cpp(arma::vec, arma::mat)’:
rbeta_ab_rep_fc_cpp.cpp:26:20: warning: comparison of integer expressions of different signedness: ‘int’ and ‘arma::uword’ {aka ‘unsigned int’} [-Wsign-compare]
   26 |   for(int i = 0; i < mu.size(); i++) {
      |                  ~~^~~~~~~~~~~
rbeta_ab_rep_fc_cpp.cpp:24:7: warning: unused variable ‘n’ [-Wunused-variable]
   24 |   int n = 1;
      |       ^
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rrho_mh_rep_cpp.cpp -o rrho_mh_rep_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rs2_rep_fc_cpp.cpp -o rs2_rep_fc_cpp.o
g++ -std=gnu++20 -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG  -I'/data/localhost/ripley/R/test-dev/Rcpp/include' -I'/data/localhost/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   -fopenmp -DARMA_WARN_LEVEL=0 -DARMA_NO_DEBUG -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c uvg_updates_bip.cpp -o uvg_updates_bip.o
uvg_updates_bip.cpp: In function ‘arma::cube sample_U_bip_cpp(const arma::cube&, const arma::cube&, const arma::mat&, const arma::vec&, const arma::vec&)’:
uvg_updates_bip.cpp:24:22: warning: unused variable ‘nB’ [-Wunused-variable]
   24 |   const unsigned int nB = R.n_cols;
      |                      ^~
uvg_updates_bip.cpp:26:22: warning: unused variable ‘RB’ [-Wunused-variable]
   26 |   const unsigned int RB = V.n_cols;
      |                      ^~
uvg_updates_bip.cpp: In function ‘arma::cube sample_V_bip_cpp(const arma::cube&, const arma::cube&, const arma::mat&, const arma::vec&, const arma::vec&)’:
uvg_updates_bip.cpp:78:22: warning: unused variable ‘nA’ [-Wunused-variable]
   78 |   const unsigned int nA = R.n_rows;
      |                      ^~
uvg_updates_bip.cpp:81:22: warning: unused variable ‘RA’ [-Wunused-variable]
   81 |   const unsigned int RA = U.n_cols;
      |                      ^~
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o lame.so RcppExports.o Xbeta_cpp.o dynamic_additive_effects.o dynamic_beta.o dynamic_latent_factors.o dynamic_latent_factors_bip.o four_cycles.o get_EZ_bip.o get_EZ_cpp.o poisson_functions.o rUV_rep_fc_cpp.o rUV_sym_fc_cpp.o rZ_batch_fc_cpp.o rZ_bin_fused.o rbeta_ab_bip_fc_cpp.o rbeta_ab_rep_fc_cpp.o rbeta_debug.o rrho_mh_rep_cpp.o rs2_rep_fc_cpp.o uvg_updates_bip.o -fopenmp -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/lame/src'
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/lame/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/lame/src'
installing to /data/localhost/ripley/R/packages/tests-devel/lame.Rcheck/00LOCK-lame/00new/lame/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lame)