* installing *source* package ‘laGP’ ...
** this is package ‘laGP’ version ‘1.5-9’
** package ‘laGP’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/laGP/src'
/data/localhost/ripley/R/R-devel/bin/R CMD SHLIB -o laGP.so *.c
using C compiler: ‘gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)’
make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/laGP/src'
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c covar.c -o covar.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c covar_sep.c -o covar_sep.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c davies.c -o davies.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c gamma.c -o gamma.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c gp.c -o gp.o
gp.c: In function ‘alcGP_omp’:
gp.c:2572:15: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp]
 2572 |       #pragma omp master
      |               ^~~
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c gp_sep.c -o gp_sep.o
gp_sep.c: In function ‘alcGPsep_omp’:
gp_sep.c:2395:15: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp]
 2395 |       #pragma omp master
      |               ^~~
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c ieci.c -o ieci.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c init.c -o init.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c laGP.c -o laGP.o
laGP.c: In function ‘aGP_R’:
laGP.c:246:15: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp]
  246 |       #pragma omp master
      |               ^~~
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c laGP_sep.c -o laGP_sep.o
laGP_sep.c: In function ‘aGPsep_R’:
laGP_sep.c:203:15: warning: ‘master’ construct deprecated since OpenMP 5.1, use ‘masked’ [-Wdeprecated-openmp]
  203 |       #pragma omp master
      |               ^~~
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c linalg.c -o linalg.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c matrix.c -o matrix.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c order.c -o order.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rbetter.c -o rbetter.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c rhelp.c -o rhelp.o
gcc -I"/data/localhost/ripley/R/R-devel/include" -DNDEBUG   -I/usr/local/include   -DRPRINT -fopenmp  -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c util.c -o util.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o laGP.so covar.o covar_sep.o davies.o gamma.o gp.o gp_sep.o ieci.o init.o laGP.o laGP_sep.o linalg.o matrix.o order.o rbetter.o rhelp.o util.o -llapack -L/data/localhost/ripley/R/R-devel/lib -lRblas -lgfortran -lm -latomic_asneeded -lquadmath -fopenmp
make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/laGP/src'
make[2]: Entering directory '/data/localhost/ripley/R/packages/tests-devel/laGP/src'
make[2]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/laGP/src'
make[1]: Leaving directory '/data/localhost/ripley/R/packages/tests-devel/laGP/src'
installing to /data/localhost/ripley/R/packages/tests-devel/laGP.Rcheck/00LOCK-laGP/00new/laGP/libs
** R
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (laGP)