- using R Under development (unstable) (2025-12-11 r89150)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘jollofR/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘jollofR’ version ‘0.6.4’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘jollofR’ can be installed ... [66s/266s] OK
See the install log for details.
- checking package directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [20s/64s] OK
- checking whether the package can be loaded with stated dependencies ... [19s/53s] OK
- checking whether the package can be unloaded cleanly ... [19s/55s] OK
- checking whether the namespace can be loaded with stated dependencies ... [18s/53s] OK
- checking whether the namespace can be unloaded cleanly ... [18s/41s] OK
- checking loading without being on the library search path ... [19s/82s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [85s/244s] OK
- checking Rd files ... OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking examples ... [20s/95s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [9m/25m] ERROR
Running ‘testthat.R’ [9m/25m]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview
> # * https://testthat.r-lib.org/articles/special-files.html
>
> library(testthat)
> library(jollofR)
>
> test_check("jollofR")
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake already exists.
(1) age_1 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_1 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(2) age_2 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_2 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(3) age_3 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_3 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(4) age_4 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_4 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(5) age_5 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_5 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(6) age_6 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_6 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(7) age_7 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_7 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(8) age_8 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_8 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(9) age_9 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_9 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(10) age_10 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_10 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(11) age_11 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_11 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(12) age_12 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesecake/fixed_and_random_effects/age_12 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
MAE MAPE RMSE corr
[1,] 1.217778 0.07325365 1.949359 0.9999999
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/cheesepop already exists.
(1) age_1 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(2) age_2 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(3) age_3 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(4) age_4 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(5) age_5 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(6) age_6 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(7) age_7 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(8) age_8 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(9) age_9 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(10) age_10 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(11) age_11 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** inla.core.safe: The inla program failed, but will rerun in case better initial values may help. try=1/1
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
*** inla.core.safe: rerun with improved initial values
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(12) age_12 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
MAE MAPE RMSE corr
[1,] 1.216667 0.07906504 1.858614 0.9999999
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices already exists.
(1) age_1 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_1 created successfully.
(2) age_2 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_2 created successfully.
(3) age_3 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_3 created successfully.
(4) age_4 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_4 created successfully.
(5) age_5 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_5 created successfully.
(6) age_6 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_6 created successfully.
(7) age_7 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_7 created successfully.
(8) age_8 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_8 created successfully.
(9) age_9 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_9 created successfully.
(10) age_10 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_10 created successfully.
(11) age_11 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_11 created successfully.
(12) age_12 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/spices/fixed_and_random_effects/age_12 created successfully.
MAE MAPE RMSE corr
[1,] 1.124444 0.07263991 1.75436 0.9999999
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/slices already exists.
(1) age_1 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(2) age_2 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(3) age_3 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(4) age_4 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(5) age_5 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(6) age_6 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(7) age_7 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(8) age_8 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(9) age_9 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(10) age_10 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(11) age_11 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(12) age_12 model is running
*** Warning *** You might want to consider to setting ``control.predictor=list(link=...)''
*** Warning *** otherwise the identity link will be used to compute the fitted values for NA data
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
MAE MAPE RMSE corr
[1,] 0.8922222 0.07508357 1.16952 0.9999999
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid already exists.
(1) age_1 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_1 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(2) age_2 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_2 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(3) age_3 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_3 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(4) age_4 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_4 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(5) age_5 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_5 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(6) age_6 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_6 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(7) age_7 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_7 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(8) age_8 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_8 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(9) age_9 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_9 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(10) age_10 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_10 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(11) age_11 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_11 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
(12) age_12 model is running
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
Directory /tmp/Rtmpga1evw/working_dir/RtmpJ6Vhvz/pyramid/fixed_and_random_effects/age_12 created successfully.
OMP: Warning #96: Cannot form a team with 16 threads, using 2 instead.
OMP: Hint Consider unsetting KMP_DEVICE_THREAD_LIMIT (KMP_ALL_THREADS), KMP_TEAMS_THREAD_LIMIT, and OMP_THREAD_LIMIT (if any are set).
MAE MAPE RMSE corr
[1,] 1.221111 0.07328148 1.956471 0.9999999
Ignoring unknown labels:
* colour : "Gender"
* linetype : "Gender"
* shape : "Gender"
Saving _problems/test_functions-53.R
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test_functions.R:53:3'): pyramid() returns a list ─────────────────
Expected `out2` to have type "list".
Actual type: "object"
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 4 ]
Error:
! Test failures.
Execution halted
- checking PDF version of manual ... [7s/29s] OK
- checking HTML version of manual ... OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 ERROR