• using R Under development (unstable) (2026-07-14 r90248)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)     GNU Fortran (GCC) 16.1.1 20260515 (Red Hat 16.1.1-2)
• running under: Fedora Linux 44 (Server Edition)
• using session charset: UTF-8 * current time: 2026-07-14 09:07:04 UTC
• using option ‘--no-stop-on-test-error’
• checking for file ‘jackstraw/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘jackstraw’ version ‘1.3.21’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘jackstraw’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [11s/12s] ERROR   Running ‘testthat.R’ [11s/12s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(jackstraw)   >   > test_check("jackstraw")   Saving _problems/test-jackstraw-741.R   Saving _problems/test-jackstraw-756.R   Saving _problems/test-jackstraw-767.R   [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1115 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-jackstraw.R:739:5'): jackstraw_pam works ─────────────────────   Expected `obj <- jackstraw_pam(Xc, pam.dat = pam.dat, s = s, B = B, verbose = FALSE)` to run silently.   Actual noise: warnings.   ── Failure ('test-jackstraw.R:754:5'): jackstraw_pam works ─────────────────────   Expected `obj <- jackstraw_pam(Xc, pam.dat = pam.dat, s = s, B = 1, verbose = FALSE)` to run silently.   Actual noise: warnings.   ── Failure ('test-jackstraw.R:765:5'): jackstraw_pam works ─────────────────────   Expected `... <- NULL` to run silently.   Actual noise: warnings.      [ FAIL 3 | WARN 1 | SKIP 0 | PASS 1115 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... OK
• checking HTML version of manual ... OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR