• using R Under development (unstable) (2025-12-28 r89254)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘iRfcb/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘iRfcb’ version ‘0.6.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘iRfcb’ can be installed ... [35s/86s] OK See the install log for details.
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [9s/29s] OK
• checking whether the package can be loaded with stated dependencies ... [8s/20s] OK
• checking whether the package can be unloaded cleanly ... [8s/23s] OK
• checking whether the namespace can be loaded with stated dependencies ... [8s/27s] OK
• checking whether the namespace can be unloaded cleanly ... [9s/25s] OK
• checking loading without being on the library search path ... [9s/30s] OK
• checking whether startup messages can be suppressed ... [9s/22s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [52s/131s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [19s/63s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [86s/243s] OK   Running ‘spelling.R’   Running ‘testthat.R’ [85s/241s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [108s/571s] ERROR Error(s) in re-building vignettes: --- re-building ‘a-general-tutorial.Rmd’ using rmarkdown Quitting from a-general-tutorial.Rmd:41-49 [unnamed-chunk-4] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `ifcb_download_test_data()`: ! Download failed after 10 attempts. --- Backtrace:     ▆  1. └─iRfcb::ifcb_download_test_data(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'a-general-tutorial.Rmd' failed with diagnostics: Download failed after 10 attempts. --- failed re-building ‘a-general-tutorial.Rmd’ --- re-building ‘qc-tutorial.Rmd’ using rmarkdown Requirement already satisfied: pip in /tmp/RtmpXpXojv/working_dir/Rtmp4eAGHY/iRfcb/lib64/python3.13/site-packages (24.3.1) Collecting pip   Downloading pip-25.3-py3-none-any.whl.metadata (4.7 kB) Collecting wheel   Downloading wheel-0.45.1-py3-none-any.whl.metadata (2.3 kB) Collecting setuptools   Downloading setuptools-80.9.0-py3-none-any.whl.metadata (6.6 kB) Downloading pip-25.3-py3-none-any.whl (1.8 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.8/1.8 MB 18.6 MB/s eta 0:00:00 Downloading wheel-0.45.1-py3-none-any.whl (72 kB) Downloading setuptools-80.9.0-py3-none-any.whl (1.2 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.2/1.2 MB 18.0 MB/s eta 0:00:00 Installing collected packages: wheel, setuptools, pip   Attempting uninstall: pip     Found existing installation: pip 24.3.1     Uninstalling pip-24.3.1:       Successfully uninstalled pip-24.3.1 Successfully installed pip-25.3 setuptools-80.9.0 wheel-0.45.1 Collecting scipy>=1.13.0 (from -r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 1))   Downloading scipy-1.16.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (62 kB) Collecting pandas>=2.2.2 (from -r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 2))   Downloading pandas-2.3.3-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl.metadata (91 kB) Collecting matplotlib>=3.9.0 (from -r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading matplotlib-3.10.8-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (52 kB) Collecting numpy<2.6,>=1.25.2 (from scipy>=1.13.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 1))   Downloading numpy-2.4.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (6.6 kB) Collecting python-dateutil>=2.8.2 (from pandas>=2.2.2->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 2))   Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl.metadata (8.4 kB) Collecting pytz>=2020.1 (from pandas>=2.2.2->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 2))   Downloading pytz-2025.2-py2.py3-none-any.whl.metadata (22 kB) Collecting tzdata>=2022.7 (from pandas>=2.2.2->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 2))   Downloading tzdata-2025.3-py2.py3-none-any.whl.metadata (1.4 kB) Collecting contourpy>=1.0.1 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading contourpy-1.3.3-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (5.5 kB) Collecting cycler>=0.10 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading cycler-0.12.1-py3-none-any.whl.metadata (3.8 kB) Collecting fonttools>=4.22.0 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading fonttools-4.61.1-cp313-cp313-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl.metadata (114 kB) Collecting kiwisolver>=1.3.1 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading kiwisolver-1.4.9-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl.metadata (6.3 kB) Collecting packaging>=20.0 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading packaging-25.0-py3-none-any.whl.metadata (3.3 kB) Collecting pillow>=8 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading pillow-12.0.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl.metadata (8.8 kB) Collecting pyparsing>=3 (from matplotlib>=3.9.0->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 3))   Downloading pyparsing-3.3.1-py3-none-any.whl.metadata (5.6 kB) Collecting six>=1.5 (from python-dateutil>=2.8.2->pandas>=2.2.2->-r /data/gannet/ripley/R/packages/tests-devel/iRfcb.Rcheck/iRfcb/python/requirements.txt (line 2))   Downloading six-1.17.0-py2.py3-none-any.whl.metadata (1.7 kB) Downloading scipy-1.16.3-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (35.7 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 35.7/35.7 MB 35.1 MB/s 0:00:01 Downloading numpy-2.4.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (16.4 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 16.4/16.4 MB 76.6 MB/s 0:00:00 Downloading pandas-2.3.3-cp313-cp313-manylinux_2_24_x86_64.manylinux_2_28_x86_64.whl (12.3 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 12.3/12.3 MB 64.3 MB/s 0:00:00 Downloading matplotlib-3.10.8-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (8.7 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 8.7/8.7 MB 40.9 MB/s 0:00:00 Downloading contourpy-1.3.3-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (362 kB) Downloading cycler-0.12.1-py3-none-any.whl (8.3 kB) Downloading fonttools-4.61.1-cp313-cp313-manylinux1_x86_64.manylinux2014_x86_64.manylinux_2_17_x86_64.manylinux_2_5_x86_64.whl (4.9 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.9/4.9 MB 49.9 MB/s 0:00:00 Downloading kiwisolver-1.4.9-cp313-cp313-manylinux2014_x86_64.manylinux_2_17_x86_64.whl (1.5 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.5/1.5 MB 39.0 MB/s 0:00:00 Downloading packaging-25.0-py3-none-any.whl (66 kB) Downloading pillow-12.0.0-cp313-cp313-manylinux_2_27_x86_64.manylinux_2_28_x86_64.whl (7.0 MB)    ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.0/7.0 MB 42.2 MB/s 0:00:00 Downloading pyparsing-3.3.1-py3-none-any.whl (121 kB) Downloading python_dateutil-2.9.0.post0-py2.py3-none-any.whl (229 kB) Downloading pytz-2025.2-py2.py3-none-any.whl (509 kB) Downloading six-1.17.0-py2.py3-none-any.whl (11 kB) Downloading tzdata-2025.3-py2.py3-none-any.whl (348 kB) Installing collected packages: pytz, tzdata, six, pyparsing, pillow, packaging, numpy, kiwisolver, fonttools, cycler, scipy, python-dateutil, contourpy, pandas, matplotlib Successfully installed contourpy-1.3.3 cycler-0.12.1 fonttools-4.61.1 kiwisolver-1.4.9 matplotlib-3.10.8 numpy-2.4.0 packaging-25.0 pandas-2.3.3 pillow-12.0.0 pyparsing-3.3.1 python-dateutil-2.9.0.post0 pytz-2025.2 scipy-1.16.3 six-1.17.0 tzdata-2025.3 Quitting from qc-tutorial.Rmd:139-159 [unnamed-chunk-9] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `py_call_impl()`: ! FileNotFoundError: [Errno 2] No such file or directory: 'data/features/2023' Run `reticulate::py_last_error()` for details. --- Backtrace:     ▆  1. └─iRfcb::ifcb_psd(...)  2. └─reticulate (local) Bin(...)  3. └─reticulate:::py_call_impl(callable, call_args$unnamed, call_args$named) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'qc-tutorial.Rmd' failed with diagnostics: FileNotFoundError: [Errno 2] No such file or directory: 'data/features/2023' Run `reticulate::py_last_error()` for details. --- failed re-building ‘qc-tutorial.Rmd’ SUMMARY: processing the following files failed:   ‘a-general-tutorial.Rmd’ ‘qc-tutorial.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [11s/28s] OK
• checking HTML version of manual ... [10s/26s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR