- using R Under development (unstable) (2025-10-22 r88967)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
- running under: Fedora Linux 42 (Workstation Edition)
- using session charset: UTF-8
- using option ‘--no-stop-on-test-error’
- checking for file ‘httk/DESCRIPTION’ ... OK
- this is package ‘httk’ version ‘2.7.3’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘httk’ can be installed ... [74s/162s] OK
See the install log for details.
- used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
- checking package directory ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... OK
- checking whether the package can be loaded with stated dependencies ... OK
- checking whether the package can be unloaded cleanly ... [5s/13s] OK
- checking whether the namespace can be loaded with stated dependencies ... [5s/14s] OK
- checking whether the namespace can be unloaded cleanly ... OK
- checking loading without being on the library search path ... [6s/10s] OK
- checking whether startup messages can be suppressed ... OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [93s/130s] OK
- checking Rd files ... [20s/26s] NOTE
checkRd: (-1) calc_mc_css.Rd:181: height/width attributes should be in pixels
checkRd: (-1) calc_mc_oral_equiv.Rd:153: height/width attributes should be in pixels
checkRd: (-1) solve_1comp.Rd:155-156: height/width attributes should be in pixels
checkRd: (-1) solve_1comp_lifestage.Rd:164-165: height/width attributes should be in pixels
checkRd: (-1) solve_3comp.Rd:184-185: height/width attributes should be in pixels
checkRd: (-1) solve_3comp2.Rd:188-189: height/width attributes should be in pixels
checkRd: (-1) solve_3comp_lifestage.Rd:195-196: height/width attributes should be in pixels
checkRd: (-1) solve_gas_pbtk.Rd:250-251: height/width attributes should be in pixels
checkRd: (-1) solve_gas_pbtk.Rd:255-262: Only 5 columns allowed in this table (row 1 has 4)
checkRd: (-1) solve_gas_pbtk.Rd:255-262: Only 5 columns allowed in this table (row 2 has 3)
checkRd: (-1) solve_gas_pbtk.Rd:255-262: Only 5 columns allowed in this table (row 3 has 4)
checkRd: (-1) solve_gas_pbtk.Rd:255-262: Only 5 columns allowed in this table (row 4 has 4)
checkRd: (-1) solve_gas_pbtk.Rd:255-262: Only 5 columns allowed in this table (row 5 has 4)
checkRd: (-1) solve_gas_pbtk.Rd:255-262: Only 5 columns allowed in this table (row 6 has 4)
checkRd: (-1) solve_model.Rd:167-174: Only 5 columns allowed in this table (row 1 has 4)
checkRd: (-1) solve_model.Rd:167-174: Only 5 columns allowed in this table (row 2 has 3)
checkRd: (-1) solve_model.Rd:167-174: Only 5 columns allowed in this table (row 3 has 4)
checkRd: (-1) solve_model.Rd:167-174: Only 5 columns allowed in this table (row 4 has 4)
checkRd: (-1) solve_model.Rd:167-174: Only 5 columns allowed in this table (row 5 has 4)
checkRd: (-1) solve_model.Rd:167-174: Only 5 columns allowed in this table (row 6 has 4)
checkRd: (-1) solve_pbtk.Rd:180-181: height/width attributes should be in pixels
checkRd: (-1) solve_pbtk_lifestage.Rd:195-196: height/width attributes should be in pixels
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking R/sysdata.rda ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [135s/138s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [359s/364s] OK
Running ‘3comp_test.R’ [27s/28s]
Comparing ‘3comp_test.Rout’ to ‘3comp_test.Rout.save’ ... OK
Running ‘3compss_test.R’ [24s/24s]
Comparing ‘3compss_test.Rout’ to ‘3compss_test.Rout.save’ ... OK
Running ‘caco2_test.R’ [37s/37s]
Comparing ‘caco2_test.Rout’ to ‘caco2_test.Rout.save’ ... OK
Running ‘cheminfo_test.R’ [15s/15s]
Comparing ‘cheminfo_test.Rout’ to ‘cheminfo_test.Rout.save’ ... OK
Running ‘fetal_pbtk_testing.R’ [19s/19s]
Comparing ‘fetal_pbtk_testing.Rout’ to ‘fetal_pbtk_testing.Rout.save’ ... OK
Running ‘ionization_tests.R’
Comparing ‘ionization_tests.Rout’ to ‘ionization_tests.Rout.save’ ... OK
Running ‘ivive_test.R’ [61s/62s]
Comparing ‘ivive_test.Rout’ to ‘ivive_test.Rout.save’ ... OK
Running ‘montecarlo_tests.R’ [46s/47s]
Comparing ‘montecarlo_tests.Rout’ to ‘montecarlo_tests.Rout.save’ ... OK
Running ‘other_tests.R’ [19s/19s]
Comparing ‘other_tests.Rout’ to ‘other_tests.Rout.save’ ... OK
Running ‘pbtk_test.R’ [20s/21s]
Comparing ‘pbtk_test.Rout’ to ‘pbtk_test.Rout.save’ ... OK
Running ‘solve_dermal_test.R’ [13s/14s]
Comparing ‘solve_dermal_test.Rout’ to ‘solve_dermal_test.Rout.save’ ... OK
Running ‘solve_gas_test.R’ [16s/16s]
Comparing ‘solve_gas_test.Rout’ to ‘solve_gas_test.Rout.save’ ... OK
Running ‘testthat.R’ [44s/44s]
Running ‘unit_test.R’ [11s/12s]
Comparing ‘unit_test.Rout’ to ‘unit_test.Rout.save’ ... OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [310s/313s] OK
- checking PDF version of manual ... [30s/30s] OK
- checking HTML version of manual ... [23s/23s] OK
- checking for non-standard things in the check directory ... OK
- checking for detritus in the temp directory ... OK
- DONE
Status: 1 NOTE