* installing *source* package ‘houba’ ...
** this is package ‘houba’ version ‘0.1.0’
** package ‘houba’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/houba/src'
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c MMatrixToRArray.cpp -o MMatrixToRArray.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c MMatrixToRMatrix.cpp -o MMatrixToRMatrix.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c colSums.cpp -o colSums.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c copy_values.cpp -o copy_values.o
In file included from ../inst/include/houba/MMatrix.h:5,
from colSums.cpp:1:
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = float]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 14]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:20:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
20 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = double]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 14]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:23:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
23 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = int]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 14]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:26:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
26 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = short int]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 14]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:29:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
29 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = float]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 13]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:20:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
20 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = double]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 13]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:23:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
23 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = int]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 13]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:26:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
26 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::colSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = short int]’:
colSums.cpp:11:23: required from ‘void cs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 13]’
11 | instanc->colSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:29:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = cs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
29 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
colSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:439:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
439 | if(result.size() != ncol_)
| ~~~~~~~~~~~~~~^~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cw_arithmetic.cpp -o cw_arithmetic.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c extract_marray.cpp -o extract_marray.o
In file included from ../inst/include/houba/MMatrix.h:5,
from extract_marray.cpp:1:
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = float]’:
extract_marray.cpp:15:27: required from here
15 | instanc->extract_array(IND, tar);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
377 | if(le != target.size())
| ~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = double]’:
extract_marray.cpp:20:27: required from here
20 | instanc->extract_array(IND, tar);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
377 | if(le != target.size())
| ~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<13>; T = int]’:
extract_marray.cpp:25:27: required from here
25 | instanc->extract_array(IND, tar);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
377 | if(le != target.size())
| ~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_array(const std::vector<U>&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = Rcpp::Vector<13>; T = short int]’:
extract_marray.cpp:30:27: required from here
30 | instanc->extract_array(IND, tar);
| ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:377:9: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
377 | if(le != target.size())
| ~~~^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c extract_mmatrix.cpp -o extract_mmatrix.o
In file included from ../inst/include/houba/MMatrix.h:5,
from extract_mmatrix.cpp:1:
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<float>; T = float]’:
extract_mmatrix.cpp:34:28: required from here
34 | instanc->extract_matrix(I, J, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
355 | if(I.size() * J.size() != target.size())
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<double>; T = double]’:
extract_mmatrix.cpp:38:28: required from here
38 | instanc->extract_matrix(I, J, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
355 | if(I.size() * J.size() != target.size())
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<int>; T = int]’:
extract_mmatrix.cpp:42:28: required from here
42 | instanc->extract_matrix(I, J, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
355 | if(I.size() * J.size() != target.size())
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_matrix(const intVec&, const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<short int>; T = short int]’:
extract_mmatrix.cpp:46:28: required from here
46 | instanc->extract_matrix(I, J, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:355:26: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
355 | if(I.size() * J.size() != target.size())
| ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c extract_mvector.cpp -o extract_mvector.o
In file included from ../inst/include/houba/MMatrix.h:5,
from extract_mvector.cpp:1:
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<float>; T = float]’:
extract_mvector.cpp:34:28: required from here
34 | instanc->extract_vector(I, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
338 | if(I.size() != target.size())
| ~~~~~~~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<double>; T = double]’:
extract_mvector.cpp:38:28: required from here
38 | instanc->extract_vector(I, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
338 | if(I.size() != target.size())
| ~~~~~~~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<int>; T = int]’:
extract_mvector.cpp:42:28: required from here
42 | instanc->extract_vector(I, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
338 | if(I.size() != target.size())
| ~~~~~~~~~^~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::extract_vector(const intVec&, targetVec&) const [with intVec = Rcpp::Vector<13>; targetVec = houba::MMatrix<short int>; T = short int]’:
extract_mvector.cpp:46:28: required from here
46 | instanc->extract_vector(I, *tar);
| ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~
../inst/include/houba/MMatrix-methods.h:338:15: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
338 | if(I.size() != target.size())
| ~~~~~~~~~^~~~~~~~~~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c flush.cpp -o flush.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c isnullptr.cpp -o isnullptr.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c link_marray.cpp -o link_marray.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c link_mmatrix.cpp -o link_mmatrix.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c print_debug.cpp -o print_debug.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rowSums.cpp -o rowSums.o
In file included from ../inst/include/houba/MMatrix.h:5,
from rowSums.cpp:1:
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = float]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 14]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:20:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
20 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = double]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 14]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:23:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
23 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = int]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 14]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:26:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
26 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<14, Rcpp::PreserveStorage>; T = short int]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 14]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:29:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 14; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
29 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:25:10: required from here
25 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = float]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = float; int T2 = 13]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:20:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
20 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = double]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = double; int T2 = 13]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:23:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
23 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = int]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = int; int T2 = 13]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:26:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
26 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
../inst/include/houba/MMatrix-methods.h: In instantiation of ‘void houba::MMatrix<T>::rowSums(resultVec&) const [with resultVec = Rcpp::Vector<13>; T = short int]’:
rowSums.cpp:11:23: required from ‘void rs::operator()(Rcpp::XPtr<houba::MMatrix<T> >, Rcpp::Vector<TSXP>) [with T = short int; int T2 = 13]’
11 | instanc->rowSums(result);
| ~~~~~~~~~~~~~~~~^~~~~~~~
apply.h:29:6: required from ‘void apply_R(SEXP, std::string, Rcpp::Vector<TSXP>, FTYPE) [with FTYPE = rs; int TSXP = 13; SEXP = SEXPREC*; std::string = std::__cxx11::basic_string<char>]’
29 | F(instanc, r_vector);
| ~^~~~~~~~~~~~~~~~~~~
rowSums.cpp:31:10: required from here
31 | apply_R(pM, datatype, result, x);
| ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
../inst/include/houba/MMatrix-methods.h:454:20: warning: comparison of integer expressions of different signedness: ‘R_xlen_t’ {aka ‘long int’} and ‘const size_t’ {aka ‘const long unsigned int’} [-Wsign-compare]
454 | if(result.size() != nrow_)
| ~~~~~~~~~~~~~~^~~~~~~~
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c set_values_marray.cpp -o set_values_marray.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c set_values_mmatrix.cpp -o set_values_mmatrix.o
g++ -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I ../inst/include/houba/ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c setdims.cpp -o setdims.o
g++ -std=gnu++17 -shared -L/usr/local/lib64 -o houba.so MMatrixToRArray.o MMatrixToRMatrix.o RcppExports.o colSums.o copy_values.o cw_arithmetic.o extract_marray.o extract_mmatrix.o extract_mvector.o flush.o isnullptr.o link_marray.o link_mmatrix.o print_debug.o rowSums.o set_values_marray.o set_values_mmatrix.o setdims.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/houba/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/houba/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/houba/src'
installing to /data/gannet/ripley/R/packages/tests-devel/houba.Rcheck/00LOCK-houba/00new/houba/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘apply’ from package ‘base’ in package ‘houba’
Creating a generic function for ‘colMeans’ from package ‘base’ in package ‘houba’
Creating a generic function for ‘colSums’ from package ‘base’ in package ‘houba’
Creating a generic function for ‘rowMeans’ from package ‘base’ in package ‘houba’
Creating a generic function for ‘rowSums’ from package ‘base’ in package ‘houba’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (houba)