* installing *source* package ‘hierNest’ ...
** this is package ‘hierNest’ version ‘1.0.2’
** package ‘hierNest’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
using Fortran compiler: ‘GNU Fortran (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hierNest/src'
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c spmatmul.f90 -o spmatmul.o
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c log_sgl_subfuns.f90 -o log_sgl_subfuns.o
log_sgl_subfuns.f90:50:13:
50 | subgp_ix = drgix(i) - drgix(startsubgp) +2
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
log_sgl_subfuns.f90:51:12:
51 | subgp_iy = drgiy(i) - drgix(startsubgp) +2
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
log_sgl_subfuns.f90:150:11:
150 | subgp_ix = drgix(i) - drgix(startsubgp) +2
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
log_sgl_subfuns.f90:151:10:
151 | subgp_iy = drgiy(i) - drgix(startsubgp) +2
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
log_sgl_subfuns.f90:15:27:
15 | DOUBLE PRECISION :: ss
| 1~
Warning: Unused variable ‘ss’ declared at (1) [-Wunused-variable]
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c sgl_subfuns.f90 -o sgl_subfuns.o
sgl_subfuns.f90:62:10:
62 | enddrg=cn_e(g)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:63:10:
63 | theta_tilt=b(startix:endix)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:66:10:
66 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:67:10:
67 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:68:10:
68 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:78:10:
78 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:229:12:
229 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:230:12:
230 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:231:12:
231 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:242:12:
242 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:409:12:
409 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:410:12:
410 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:411:12:
411 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sgl_subfuns.f90:420:12:
420 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c sparsegl.f90 -o sparsegl.o
sparsegl.f90:222:14:
222 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:223:14:
223 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:224:14:
224 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:233:14:
233 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:520:14:
520 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:521:14:
521 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:522:14:
522 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:531:14:
531 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegl.f90:23:22:
23 | INTEGER:: endsubgp,drgdim
| 1~~~~~
Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable]
sparsegl.f90:316:22:
316 | INTEGER:: endsubgp,drgdim
| 1~~~~~
Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable]
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c sparsegllog.f90 -o sparsegllog.o
sparsegllog.f90:236:14:
236 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:237:14:
237 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:238:14:
238 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:247:14:
247 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:550:14:
550 | DO drginx = startdrg, enddrg
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:551:14:
551 | drgstartinx=drgix(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:552:14:
552 | drgendinx=drgiy(drginx)
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:561:14:
561 | ENDDO
| 1
Warning: Nonconforming tab character at (1) [-Wtabs]
sparsegllog.f90:22:22:
22 | INTEGER:: endsubgp,drgdim
| 1~~~~~
Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable]
sparsegllog.f90:336:22:
336 | INTEGER:: endsubgp,drgdim
| 1~~~~~
Warning: Unused variable ‘drgdim’ declared at (1) [-Wunused-variable]
gfortran -fpic -g -O2 -mtune=native -Wall -pedantic -c wsgl.f90 -o wsgl.o
wsgl.f90:3:25:
3 | npass,jerr,alsparse1,alsparse2,lb,ub,sset,eset,b0old,betaold,al0,findlambda,l,me,cn)
| 1~~~~~~~~
Warning: Unused dummy argument ‘alsparse2’ at (1) [-Wunused-dummy-argument]
wsgl.f90:219:25:
219 | npass,jerr,alsparse1,alsparse2,lb,ub,sset,eset,b0old,betaold,al0,findlambda,l,me,cn)
| 1~~~~~~~~
Warning: Unused dummy argument ‘alsparse2’ at (1) [-Wunused-dummy-argument]
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c sparsegl_init.c -o sparsegl_init.o
gcc -shared -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -fpic -L/usr/local/lib64 -o hierNest.so log_sgl_subfuns.o sgl_subfuns.o sparsegl.o sparsegl_init.o sparsegllog.o spmatmul.o wsgl.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hierNest/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hierNest/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hierNest/src'
installing to /data/gannet/ripley/R/packages/tests-devel/hierNest.Rcheck/00LOCK-hierNest/00new/hierNest/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hierNest)