Install log for 'hexify'

* installing *source* package ‘hexify’ ...
** this is package ‘hexify’ version ‘0.6.5’
** package ‘hexify’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hexify/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c aperture.cpp -o aperture.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c aperture_sequence.cpp -o aperture_sequence.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cell_index.cpp -o cell_index.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c coordinate_transforms.cpp -o coordinate_transforms.o
coordinate_transforms.cpp:38:1: warning: multi-line comment [-Wcomment]
   38 | //                  /\
      | ^
coordinate_transforms.cpp:977:1: warning: multi-line comment [-Wcomment]
  977 | //             /\
      | ^
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c icosahedron.cpp -o icosahedron.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ijk_coordinates.cpp -o ijk_coordinates.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c index_z3.cpp -o index_z3.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c index_z7.cpp -o index_z7.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c index_zorder.cpp -o index_zorder.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c projection_forward.cpp -o projection_forward.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c projection_inverse.cpp -o projection_inverse.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_aperture.cpp -o rcpp_aperture.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_cell.cpp -o rcpp_cell.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_index.cpp -o rcpp_index.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_projection.cpp -o rcpp_projection.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c rcpp_h3.cpp -o rcpp_h3.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/algos.c -o h3/algos.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/area.c -o h3/area.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/baseCells.c -o h3/baseCells.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/bbox.c -o h3/bbox.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/cellsToMultiPoly.c -o h3/cellsToMultiPoly.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/coordijk.c -o h3/coordijk.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/directedEdge.c -o h3/directedEdge.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/faceijk.c -o h3/faceijk.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/h3Assert.c -o h3/h3Assert.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/h3Index.c -o h3/h3Index.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/iterators.c -o h3/iterators.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/latLng.c -o h3/latLng.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/linkedGeo.c -o h3/linkedGeo.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/localij.c -o h3/localij.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/mathExtensions.c -o h3/mathExtensions.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/polyfill.c -o h3/polyfill.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/polygon.c -o h3/polygon.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/vec2d.c -o h3/vec2d.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/vec3d.c -o h3/vec3d.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/vertex.c -o h3/vertex.o
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -Ih3 -DH3_PREFIX=hexify_h3_ -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes  -c h3/vertexGraph.c -o h3/vertexGraph.o
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o hexify.so RcppExports.o aperture.o aperture_sequence.o cell_index.o coordinate_transforms.o icosahedron.o ijk_coordinates.o index_z3.o index_z7.o index_zorder.o projection_forward.o projection_inverse.o rcpp_aperture.o rcpp_cell.o rcpp_index.o rcpp_projection.o rcpp_h3.o h3/algos.o h3/area.o h3/baseCells.o h3/bbox.o h3/cellsToMultiPoly.o h3/coordijk.o h3/directedEdge.o h3/faceijk.o h3/h3Assert.o h3/h3Index.o h3/iterators.o h3/latLng.o h3/linkedGeo.o h3/localij.o h3/mathExtensions.o h3/polyfill.o h3/polygon.o h3/vec2d.o h3/vec3d.o h3/vertex.o h3/vertexGraph.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hexify/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hexify/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hexify/src'
installing to /data/gannet/ripley/R/packages/tests-devel/hexify.Rcheck/00LOCK-hexify/00new/hexify/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘nrow’ from package ‘base’ in package ‘hexify’
Creating a generic function for ‘ncol’ from package ‘base’ in package ‘hexify’
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hexify)