• using R Under development (unstable) (2025-12-26 r89238)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)     GNU Fortran (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)
• running under: Fedora Linux 42 (Workstation Edition)
• using session charset: UTF-8
• using option ‘--no-stop-on-test-error’
• checking for file ‘hdf5r/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘hdf5r’ version ‘1.3.12’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘hdf5r’ can be installed ... [103s/125s] OK See the install log for details.
• used C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
• checking package directory ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... OK
• checking whether the package can be loaded with stated dependencies ... OK
• checking whether the package can be unloaded cleanly ... OK
• checking whether the namespace can be loaded with stated dependencies ... OK
• checking whether the namespace can be unloaded cleanly ... OK
• checking loading without being on the library search path ... OK
• checking whether startup messages can be suppressed ... OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [23s/28s] OK
• checking Rd files ... OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [47s/50s] ERROR   Running ‘testthat.R’ [47s/50s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(hdf5r)   >   > test_check("hdf5r")   Saving _problems/test-h5t-64.R   [ FAIL 1 | WARN 0 | SKIP 3 | PASS 996 ]      ══ Skipped tests (3) ═══════════════════════════════════════════════════════════   • empty test (3): 'test-h5t.R:147:1', 'test-h5t.R:174:1',     'test-zzz-H5File.R:156:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-h5t.R:64:5'): H5T_COMPOUND works ───────────────────────────────   Error in `super$initialize(labels = labels, dtypes = dtypes, size = NULL, offset = NULL)`: HDF5-API Errors:       error #000: ../../src/H5T.c in H5Tget_size(): line 2440: not a datatype           class: HDF5           major: Invalid arguments to routine           minor: Inappropriate type      Backtrace:       ▆    1. └─H5T_COMPLEX$new() at test-h5t.R:64:5    2. └─hdf5r (local) initialize(...)    3. └─super$initialize(...)      [ FAIL 1 | WARN 0 | SKIP 3 | PASS 996 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [31s/34s] OK
• checking PDF version of manual ... [13s/15s] OK
• checking HTML version of manual ... [15s/18s] OK
• checking for non-standard things in the check directory ... OK
• checking for detritus in the temp directory ... OK
• DONE

Status: 1 ERROR