* installing *source* package ‘hclust1d’ ...
** package ‘hclust1d’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (GCC) 14.0.1 20240503 (prerelease)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c dedistance.cpp -o dedistance.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hclust1d_heapbased.cpp -o hclust1d_heapbased.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c hclust1d_single.cpp -o hclust1d_single.o
hclust1d_heapbased.cpp: In function 'Rcpp::List hclust1d_heapbased(Rcpp::NumericVector&, int)':
hclust1d_heapbased.cpp:229:61: warning: 'id_cluster_count' may be used uninitialized [-Wmaybe-uninitialized]
  229 |                          (left_part_cluster_counts[left_id] + id_cluster_count);
      |                          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:149:9: note: 'id_cluster_count' was declared here
  149 |     int id_cluster_count;
      |         ^~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:221:53: warning: 'id_centroid_aggregate' may be used uninitialized [-Wmaybe-uninitialized]
  221 |             double distance = id_centroid_aggregate / id_cluster_count -
      |                               ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:150:12: note: 'id_centroid_aggregate' was declared here
  150 |     double id_centroid_aggregate;
      |            ^~~~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:263:63: warning: 'id_rightish_weighted_distance_sums' may be used uninitialized [-Wmaybe-uninitialized]
  263 |           right_part_rightish_weighted_distance_sums[left_id] = id_rightish_weighted_distance_sums;
hclust1d_heapbased.cpp:151:12: note: 'id_rightish_weighted_distance_sums' was declared here
  151 |     double id_rightish_weighted_distance_sums;
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:259:32: warning: 'id_leftish_weighted_distance_sums' may be used uninitialized [-Wmaybe-uninitialized]
  259 |                            0.5 * id_leftish_weighted_distance_sums +
      |                            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
hclust1d_heapbased.cpp:152:12: note: 'id_leftish_weighted_distance_sums' was declared here
  152 |     double id_leftish_weighted_distance_sums;
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c heap.cpp -o heap.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c order.cpp -o order.o
g++-14 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I/usr/local/include    -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c sqrt.cpp -o sqrt.o
g++-14 -std=gnu++17 -shared -L/usr/local/gcc14/lib64 -L/usr/local/lib64 -o hclust1d.so RcppExports.o dedistance.o hclust1d_heapbased.o hclust1d_single.o heap.o order.o sqrt.o
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/hclust1d/src'
installing to /data/gannet/ripley/R/packages/tests-devel/hclust1d.Rcheck/00LOCK-hclust1d/00new/hclust1d/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hclust1d)