* installing *source* package ‘harmony’ ...
** this is package ‘harmony’ version ‘2.0.3’
** package ‘harmony’ successfully unpacked and MD5 sums checked
** using staged installation
checking for single-precision BLAS procedures (sdot_, sgemm_)...
  single-precision BLAS NOT found
checking for single-precision LAPACK procedures (sgesv_)...
  single-precision LAPACK found
checking for double-precision BLAS procedures (ddot_, dgemm_)...
  double-precision BLAS NOT found
checking for double-precision LAPACK procedures (dgesv_)...
  double-precision LAPACK found
  single-precision routines not fully available -- using double scalar
  disabling BLAS for Armadillo (double-precision routines absent)
configure: src/Makevars written
  PKG_CXXFLAGS = -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS
  PKG_LIBS     = -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
** libs
using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/harmony/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c harmony.cpp -o harmony.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c timer.cpp -o timer.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppProgress/include' -I/usr/local/include   -DARMA_USE_CURRENT -DHARMONY_SCALAR_DOUBLE -DARMA_DONT_USE_BLAS -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c utils.cpp -o utils.o
harmony.cpp: In member function ‘void harmony::moe_correct_ridge_cpp()’:
harmony.cpp:374:64: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  374 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
harmony.cpp:395:64: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘__gnu_cxx::__alloc_traits<std::allocator<int>, int>::value_type’ {aka ‘int’} [-Wsign-compare]
  395 |       if ((current_covariate < covariate_bounds.size()) && !(b < covariate_bounds[current_covariate])) {
g++ -std=gnu++20 -shared -L/usr/local/lib64 -o harmony.so RcppExports.o harmony.o timer.o utils.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/harmony/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/harmony/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/harmony/src'
installing to /data/gannet/ripley/R/packages/tests-devel/harmony.Rcheck/00LOCK-harmony/00new/harmony/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (harmony)