Install log for 'grpsel'

* installing *source* package ‘grpsel’ ...
** package ‘grpsel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (GCC) 13.2.0’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/grpsel/src'
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c cd.cpp -o cd.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c fit-surface.cpp -o fit-surface.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c lipschitz.cpp -o lipschitz.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c loss.cpp -o loss.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c ls.cpp -o ls.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c orthogonalise.cpp -o orthogonalise.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c standardise.cpp -o standardise.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c surface.cpp -o surface.o
g++-13 -std=gnu++17 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG  -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include   "-Iinclude" -fpic  -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection   -c threshold.cpp -o threshold.o
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo:405,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
                 from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:29,
                 from ls.cpp:1:
In function 'void arma::arma_check_bounds(bool, const T1&) [with T1 = char [39]]',
    inlined from 'const oT& arma::field<oT>::operator()(arma::uword) const [with oT = arma::Col<unsigned int>]' at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/field_meat.hpp:553:26,
    inlined from 'void ls::update_square_orthogonal(fit&, par&, cd&)' at ls.cpp:96:32:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/debug.hpp:473:3: warning: 'best_s' may be used uninitialized [-Wmaybe-uninitialized]
  473 |   if(state)  { arma_stop_bounds_error(arma_str::str_wrapper(x)); }
      |   ^~
ls.cpp: In member function 'void ls::update_square_orthogonal(fit&, par&, cd&)':
ls.cpp:52:19: note: 'best_s' was declared here
   52 |       arma::uword best_s;
      |                   ^~~~~~
In function 'void arma::arma_check_bounds(bool, const T1&) [with T1 = char [39]]',
    inlined from 'const oT& arma::field<oT>::operator()(arma::uword) const [with oT = arma::Col<unsigned int>]' at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/field_meat.hpp:553:26,
    inlined from 'void ls::update_logistic(fit&, par&, cd&)' at ls.cpp:355:32:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/debug.hpp:473:3: warning: 'best_s' may be used uninitialized [-Wmaybe-uninitialized]
  473 |   if(state)  { arma_stop_bounds_error(arma_str::str_wrapper(x)); }
      |   ^~
ls.cpp: In member function 'void ls::update_logistic(fit&, par&, cd&)':
ls.cpp:291:19: note: 'best_s' was declared here
  291 |       arma::uword best_s;
      |                   ^~~~~~
In function 'void arma::arma_check_bounds(bool, const T1&) [with T1 = char [39]]',
    inlined from 'const oT& arma::field<oT>::operator()(arma::uword) const [with oT = arma::Col<unsigned int>]' at /data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/field_meat.hpp:553:26,
    inlined from 'void ls::update_square(fit&, par&, cd&)' at ls.cpp:221:32:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/armadillo_bits/debug.hpp:473:3: warning: 'best_s' may be used uninitialized [-Wmaybe-uninitialized]
  473 |   if(state)  { arma_stop_bounds_error(arma_str::str_wrapper(x)); }
      |   ^~
ls.cpp: In member function 'void ls::update_square(fit&, par&, cd&)':
ls.cpp:163:19: note: 'best_s' was declared here
  163 |       arma::uword best_s;
      |                   ^~~~~~
g++-13 -std=gnu++17 -shared -L/usr/local/gcc13/lib64 -L/usr/local/lib64 -L/usr/local/clang18/lib/x86_64-unknown-linux-gnu -o grpsel.so RcppExports.o cd.o fit-surface.o lipschitz.o loss.o ls.o orthogonalise.o standardise.o surface.o threshold.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/grpsel/src'
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/grpsel/src'
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/grpsel/src'
installing to /data/gannet/ripley/R/packages/tests-devel/grpsel.Rcheck/00LOCK-grpsel/00new/grpsel/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (grpsel)