* installing *source* package ‘growfunctions’ ...
** this is package ‘growfunctions’ version ‘0.17’
** package ‘growfunctions’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C compiler: ‘gcc (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
using C++ compiler: ‘g++ (GCC) 15.1.1 20250521 (Red Hat 15.1.1-2)’
make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/growfunctions/src'
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpmix.cpp -o dpmix.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpmix_count.cpp -o dpmix_count.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c dpmix_moves.cpp -o dpmix_moves.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gen_bb.cpp -o gen_bb.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gp.cpp -o gp.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gpbfix.cpp -o gpbfix.o
gen_bb.cpp: In function ‘SEXPREC* predict_gmrf_bb(SEXP, SEXP, SEXP)’:
gen_bb.cpp:480:68: error: reference to ‘span’ is ambiguous
480 | Qstar_tete_p(m,k) = Qstar_p(m,k).submat(span(T_train,(T_tot-1)),
| ^~~~
In file included from /usr/include/c++/15/format:51,
from /usr/include/c++/15/bits/chrono_io.h:41,
from /usr/include/c++/15/chrono:3378,
from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:53,
from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32,
from growfunctions.h:11,
from gen_bb.cpp:1:
/usr/include/c++/15/span:60:11: note: candidates are: ‘template<class _Type, long unsigned int _Extent> class std::span’
60 | class span;
| ^~~~
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:155:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/span.hpp:38:8: note: ‘struct arma::span’
38 | struct span : public span_base<>
| ^~~~
gen_bb.cpp:481:56: error: reference to ‘span’ is ambiguous
481 | span(T_train,(T_tot-1)));
| ^~~~
/usr/include/c++/15/span:60:11: note: candidates are: ‘template<class _Type, long unsigned int _Extent> class std::span’
60 | class span;
| ^~~~
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/span.hpp:38:8: note: ‘struct arma::span’
38 | struct span : public span_base<>
| ^~~~
gen_bb.cpp:482:68: error: reference to ‘span’ is ambiguous
482 | Qstar_tetr_p(m,k) = Qstar_p(m,k).submat(span(T_train,(T_tot-1)),
| ^~~~
/usr/include/c++/15/span:60:11: note: candidates are: ‘template<class _Type, long unsigned int _Extent> class std::span’
60 | class span;
| ^~~~
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/span.hpp:38:8: note: ‘struct arma::span’
38 | struct span : public span_base<>
| ^~~~
gen_bb.cpp:483:56: error: reference to ‘span’ is ambiguous
483 | span(0,(T_train-1)));
| ^~~~
/usr/include/c++/15/span:60:11: note: candidates are: ‘template<class _Type, long unsigned int _Extent> class std::span’
60 | class span;
| ^~~~
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/span.hpp:38:8: note: ‘struct arma::span’
38 | struct span : public span_base<>
| ^~~~
make[1]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:201: gen_bb.o] Error 1
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gpdpbmix.cpp -o gpdpbmix.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gpdpmix.cpp -o gpdpmix.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gpdpmix_moves.cpp -o gpdpmix_moves.o
gpdpmix_moves.cpp: In function ‘arma::mat update_w(const arma::mat&, double)’:
gpdpmix_moves.cpp:1407:19: error: reference to ‘span’ is ambiguous
1407 | w_tot.submat(span(0,(P-1)),span::all) = wpm;
| ^~~~
In file included from /usr/include/c++/15/format:51,
from /usr/include/c++/15/bits/chrono_io.h:41,
from /usr/include/c++/15/chrono:3378,
from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:53,
from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo/interface/RcppArmadilloForward.h:57,
from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/RcppArmadillo.h:32,
from growfunctions.h:11,
from gpdpmix_moves.cpp:1:
/usr/include/c++/15/span:60:11: note: candidates are: ‘template<class _Type, long unsigned int _Extent> class std::span’
60 | class span;
| ^~~~
In file included from /data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo:155:
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/span.hpp:38:8: note: ‘struct arma::span’
38 | struct span : public span_base<>
| ^~~~
gpdpmix_moves.cpp:1407:33: error: reference to ‘span’ is ambiguous
1407 | w_tot.submat(span(0,(P-1)),span::all) = wpm;
| ^~~~
/usr/include/c++/15/span:60:11: note: candidates are: ‘template<class _Type, long unsigned int _Extent> class std::span’
60 | class span;
| ^~~~
/data/gannet/ripley/R/test-dev/RcppArmadillo/include/current/armadillo_bits/span.hpp:38:8: note: ‘struct arma::span’
38 | struct span : public span_base<>
| ^~~~
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c gpfix.cpp -o gpfix.o
make[1]: *** [/data/gannet/ripley/R/R-devel/etc/Makeconf:201: gpdpmix_moves.o] Error 1
gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c growfunctions_init.c -o growfunctions_init.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c lsqcluster_cpp.cpp -o lsqcluster_cpp.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c sppmcarmix_moves.cpp -o sppmcarmix_moves.o
g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c utility.cpp -o utility.o
make[1]: Target 'all' not remade because of errors.
make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/growfunctions/src'
ERROR: compilation failed for package ‘growfunctions’
* removing ‘/data/gannet/ripley/R/packages/tests-devel/growfunctions.Rcheck/growfunctions’