* installing *source* package ‘glmbayes’ ... ** this is package ‘glmbayes’ version ‘0.9.5’ ** package ‘glmbayes’ successfully unpacked and MD5 sums checked ** using staged installation >> configure: R_HOME = '/data/gannet/ripley/R/R-devel' >> Detected RcppParallel include dir: /data/gannet/ripley/R/test-dev/RcppParallel/include >> Detected RcppParallel lib dir: /data/gannet/ripley/R/test-dev/RcppParallel/lib >> RPP_INC_DIR = '/data/gannet/ripley/R/test-dev/RcppParallel/include' >> RPP_LIB_DIR = '/data/gannet/ripley/R/test-dev/RcppParallel/lib' 🔧 EMSCRIPTEN_BUILD=NO >> OS = 'Linux' >> RPP_CPPFLAGS = '-I/data/gannet/ripley/R/test-dev/RcppParallel/include' >> RPP_LDFLAGS = '-L/data/gannet/ripley/R/test-dev/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/data/gannet/ripley/R/test-dev/RcppParallel/lib' 📚 Collecting system include directories from gcc... /usr/libexec/gcc/x86_64-redhat-linux/15/cc1plus -E -quiet -v -D_GNU_SOURCE - -mtune=generic -march=x86-64 -dumpbase - /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15 /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/x86_64-redhat-linux /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/backward /usr/lib/gcc/x86_64-redhat-linux/15/include /usr/local/include /usr/include 🔎 Checking: /usr/libexec/gcc/x86_64-redhat-linux/15/cc1plus 🔎 Checking: -E 🔎 Checking: -quiet 🔎 Checking: -v 🔎 Checking: -D_GNU_SOURCE 🔎 Checking: - 🔎 Checking: -mtune=generic 🔎 Checking: -march=x86-64 🔎 Checking: -dumpbase 🔎 Checking: - 🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15 🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/x86_64-redhat-linux 🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/../../../../include/c++/15/backward 🔎 Checking: /usr/lib/gcc/x86_64-redhat-linux/15/include 🔎 Checking: /usr/local/include 🔎 Checking: /usr/include ✅ Found OpenCL header in: /usr/include 📚 Collecting system lib directories from gcc... /usr/x86_64-redhat-linux/lib64 /usr/x86_64-redhat-linux/lib64 /usr/x86_64-redhat-linux/lib64 🔎 Checking: /usr/x86_64-redhat-linux/lib64 ⚠️ OpenCL not found: falling back to CPU-only Final OpenCL Detection: OPENCL_INCLUDE_FOUND = yes OPENCL_LIB_FOUND = no OPENCL_FOUND = no OPENCL_RUNTIME_FOUND = no OpenCL manually disabled or not discovered Checking for NVIDIA GPU via nvidia-smi... ⚠️ CUDA driver library not found — GPU detection may fail. GPU detected: env: ‘/usr/bin/nvidia-smi’: No such file or directory >> FULL_CXXFLAGS = '' >> FULL_LIBS = ' $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS)' >> FULL_CXXFLAGS = ' -I/data/gannet/ripley/R/test-dev/RcppParallel/include' >> FULL_LIBS = ' $(LAPACK_LIBS) $(BLAS_LIBS) $(FLIBS) -L/data/gannet/ripley/R/test-dev/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/data/gannet/ripley/R/test-dev/RcppParallel/lib' >> Resolving Rcpp include flags via tools/rcpp_include.R configure: single Rcpp installation: /data/gannet/ripley/R/test-dev configure: R version: 4.7.0 (svn: 90087) configure: Rcpp Repository: CRAN configure: Rcpp Function.h: line with R_getVarEx + R_UnboundValue present = FALSE configure: WARNING: Rcpp looks like a CRAN install (no GitHub Remote* fields). configure: WARNING: On R-devel / R >= 4.5, stale CRAN headers can be incompatible configure: WARNING: with R (e.g. R_NamespaceRegistry). Consider configure: WARNING: remotes::install_github("RcppCore/Rcpp") or ensure configure: WARNING: install_github actually replaced the library. configure: Rcpp Function.h - `Function(const string& name, const string& ns)` C preprocessor path: configure: branch 3: R_getRegisteredNamespace configure: (R_VERSION < 4,5,0) => FALSE configure: (R_VERSION < 4,6,0 || R_SVN_REVISION < 89746) => FALSE [parts: R_VERSION < 4,6,0 = FALSE; R_SVN_REVISION < 89746 = FALSE] configure: R_SVN_REVISION (from Rversion.h) = 90087 configure: R session svn (R.version) = 90087 (should match Rversion.h for same R install) configure: (Branch 3 uses R_getRegisteredNamespace: undefined symbol usually means R headers are older than Rcpp expects, or a mismatched R/lib.) configure: R version: 4.7.0 (svn: 90087) configure: confirmed Rcpp package version 1.1.1.1.1 (library: /data/gannet/ripley/R/test-dev) >> Rcpp Function.h branch (for Makevars) = 3 (see tools/rcpp_include.R stderr for conditions) >> RCPP_CPPFLAGS = '-I"/data/gannet/ripley/R/test-dev/Rcpp/include"' ** libs using C compiler: ‘gcc (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ using C++ compiler: ‘g++ (GCC) 15.2.1 20260123 (Red Hat 15.2.1-7)’ make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/glmbayes/src' g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeBuild.cpp -o EnvelopeBuild.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeBuild_Ind_Normal_Gamma.cpp -o EnvelopeBuild_Ind_Normal_Gamma.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeCentering.cpp -o EnvelopeCentering.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeDispersionBuild.cpp -o EnvelopeDispersionBuild.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeEval.cpp -o EnvelopeEval.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeOrchestrator.cpp -o EnvelopeOrchestrator.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeSize.cpp -o EnvelopeSize.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c EnvelopeSort.cpp -o EnvelopeSort.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c OpenCL_helper.cpp -o OpenCL_helper.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Set_Grid.cpp -o Set_Grid.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c Set_LogP.cpp -o Set_LogP.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c bd0.c -o bd0.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c chebyshev.c -o chebyshev.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c configure_OpenCL.cpp -o configure_OpenCL.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c cuda_probe.cpp -o cuda_probe.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dbinom.c -o dbinom.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dgamma.c -o dgamma.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dnorm.c -o dnorm.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c dpois.c -o dpois.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c export_wrappers.cpp -o export_wrappers.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c famfuncs_Gamma.cpp -o famfuncs_Gamma.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c famfuncs_binomial.cpp -o famfuncs_binomial.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c famfuncs_gaussian.cpp -o famfuncs_gaussian.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c famfuncs_poisson.cpp -o famfuncs_poisson.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c glmbayes_getRegisteredNamespace.cpp -o glmbayes_getRegisteredNamespace.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c invgamma_ct.cpp -o invgamma_ct.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kernel_loader.cpp -o kernel_loader.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kernel_runners.cpp -o kernel_runners.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c kernel_wrappers.cpp -o kernel_wrappers.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lgamma.c -o lgamma.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c lgammacor.c -o lgammacor.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c log1p.c -o log1p.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c opencl_detect.cpp -o opencl_detect.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pgamma.c -o pgamma.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c pnorm.c -o pnorm.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c progress_utils.cpp -o progress_utils.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c qgamma.c -o qgamma.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rGammaGamma.cpp -o rGammaGamma.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rGammaGaussian.cpp -o rGammaGaussian.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rIndepNormalGammaReg.cpp -o rIndepNormalGammaReg.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rNormalGLM.cpp -o rNormalGLM.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rNormalGammaReg.cpp -o rNormalGammaReg.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rNormalReg.cpp -o rNormalReg.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rng_utils.cpp -o rng_utils.o g++ -std=gnu++20 -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -I/data/gannet/ripley/R/test-dev/RcppParallel/include -DGLMBAYES_RCPP_FH_SIM=3 -include glmbayes_getRegisteredNamespace.h -fpic -g -O2 -Wall -pedantic -mtune=native -Wno-ignored-attributes -Wno-parentheses -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -c rnorm_ct.cpp -o rnorm_ct.o gcc -I"/data/gannet/ripley/R/R-devel/include" -DNDEBUG -I"/data/gannet/ripley/R/test-dev/Rcpp/include" -I'/data/gannet/ripley/R/test-dev/Rcpp/include' -I'/data/gannet/ripley/R/test-dev/RcppArmadillo/include' -I'/data/gannet/ripley/R/test-dev/RcppParallel/include' -I/usr/local/include -fpic -g -O2 -Wall -pedantic -mtune=native -Wp,-D_FORTIFY_SOURCE=3 -fexceptions -fstack-protector-strong -fstack-clash-protection -fcf-protection -Werror=implicit-function-declaration -Wstrict-prototypes -c stirlerr.c -o stirlerr.o g++ -std=gnu++20 -shared -L/usr/local/lib64 -o glmbayes.so EnvelopeBuild.o EnvelopeBuild_Ind_Normal_Gamma.o EnvelopeCentering.o EnvelopeDispersionBuild.o EnvelopeEval.o EnvelopeOrchestrator.o EnvelopeSize.o EnvelopeSort.o OpenCL_helper.o RcppExports.o Set_Grid.o Set_LogP.o bd0.o chebyshev.o configure_OpenCL.o cuda_probe.o dbinom.o dgamma.o dnorm.o dpois.o export_wrappers.o famfuncs_Gamma.o famfuncs_binomial.o famfuncs_gaussian.o famfuncs_poisson.o glmbayes_getRegisteredNamespace.o invgamma_ct.o kernel_loader.o kernel_runners.o kernel_wrappers.o lgamma.o lgammacor.o log1p.o opencl_detect.o pgamma.o pnorm.o progress_utils.o qgamma.o rGammaGamma.o rGammaGaussian.o rIndepNormalGammaReg.o rNormalGLM.o rNormalGammaReg.o rNormalReg.o rng_utils.o rnorm_ct.o stirlerr.o -llapack -L/data/gannet/ripley/R/R-devel/lib -lRblas -lgfortran -lm -lquadmath -L/data/gannet/ripley/R/test-dev/RcppParallel/lib -ltbb -ltbbmalloc -Wl,-rpath,/data/gannet/ripley/R/test-dev/RcppParallel/lib make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/glmbayes/src' make[1]: Entering directory '/data/gannet/ripley/R/packages/tests-devel/glmbayes/src' make[1]: Leaving directory '/data/gannet/ripley/R/packages/tests-devel/glmbayes/src' installing to /data/gannet/ripley/R/packages/tests-devel/glmbayes.Rcheck/00LOCK-glmbayes/00new/glmbayes/libs ** R ** data *** moving datasets to lazyload DB ** demo ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (glmbayes)